RchiOBHm_Chr6g0283231

Belongs to the formin-like family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
46446932 .. 46448947
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25393

Sequence Viewer

Length: 285 bp
ATGGCGGAGGGAGCAGCTTGCAGTGGTTCGCTAACAATTCCAGAGCGACGCTTTCGAGCTTCCTCTATATATGCACTGTCGAGTAGAGCCACAACTCCACGAGTAGCGACGCCGGAAGTGAACTGGTCTCCGTACCAGAAACTCAACTCGATCAAGAGATCGGATAGATATAGGTCGAGTCCTGAGTTTGCAGCCACTTCTGCCAATCGCAAAGCTGCCACTTCTGCCGATCGCAAAGTCGCCACCACCTCAGAACCTGATTCGCCGTCGTCGATGATGTCTTGA

Protein Analysis

94

Amino Acids

10.16

Weight (kDa)

10.11

Isoelectric Point (pI)

67.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021453)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283231
rosa_roxburghii Rroxscaffold_5G00348040
rosa_samantha Rh2AG196800 Rh2DG204700 Rh6DG260700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 134
AluBI AGCT 3 cut(s) 17, 59, 215
AluI AGCT 3 cut(s) 17, 59, 215
Alw26I GTCTC 1 cut(s) 132
AlwNI CAGNNNCTG 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 14, 191, 215
BauI CACGAG 1 cut(s) 99
BbvI GCAGC 3 cut(s) 26, 202, 203
BceAI ACGGC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 3 cut(s) 15, 192, 216
BlsI GCNGC 3 cut(s) 16, 193, 217
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 174, 264
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 3 cut(s) 26, 202, 203
Bsh1285I CGRYCG 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 150, 158, 229
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 175, 263
BspTNI GGTCTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 128
BssMI GATC 3 cut(s) 150, 158, 229
BssNI GRCGYC 1 cut(s) 110
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 183, 250
BstKTI GATC 3 cut(s) 153, 161, 232
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 150, 158, 229
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 3 cut(s) 11, 200, 224
BstV1I GCAGC 3 cut(s) 26, 202, 203
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 74
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 257
CseI GACGC 2 cut(s) 57, 118
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 5 cut(s) 17, 59, 89, 194, 215
CviKI_1 RGCY 5 cut(s) 17, 59, 89, 194, 215
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 183, 250
DpnI GATC 3 cut(s) 152, 160, 231
DpnII GATC 3 cut(s) 150, 158, 229
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 132
FaiI YATR 4 cut(s) 68, 70, 72, 171
Fnu4HI GCNGC 3 cut(s) 15, 192, 216
Fsp4HI GCNGC 3 cut(s) 15, 192, 216
GluI GCNGC 3 cut(s) 15, 192, 216
HapII CCGG 1 cut(s) 113
HgaI GACGC 2 cut(s) 57, 118
Hin1I GRCGYC 1 cut(s) 110
HinfI GANTC 2 cut(s) 178, 260
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 163, 253
Hpy188III TCNNGA 4 cut(s) 41, 154, 182, 282
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 4 cut(s) 51, 112, 271, 274
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 21, 74, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 200, 224
HpyF3I CTNAG 2 cut(s) 183, 250
Hsp92I GRCGYC 1 cut(s) 110
Kzo9I GATC 3 cut(s) 150, 158, 229
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 54, 109, 126, 149, 195, 270
Lsp1109I GCAGC 3 cut(s) 26, 202, 203
MalI GATC 3 cut(s) 152, 160, 231
MboI GATC 3 cut(s) 150, 158, 229
MluCI AATT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 73, 259
MspI CCGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 11, 200, 224
NdeII GATC 3 cut(s) 150, 158, 229
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 3 cut(s) 16, 193, 217
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 257
PvuI CGATCG 1 cut(s) 232
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 3 cut(s) 15, 192, 216
Sau3AI GATC 3 cut(s) 150, 158, 229
SchI GAGTC 1 cut(s) 187
SetI ASST 6 cut(s) 19, 61, 176, 217, 251, 259
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 55, 80, 149, 176, 272
TasI AATT 1 cut(s) 36
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 28, 81
TseI GCWGC 3 cut(s) 14, 191, 215
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 2 cut(s) 28, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.