Rh2DG204700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0021453
Physical Location & Seq
Forward (+)
19071802 .. 19072146
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG204700.1

Sequence Viewer

Length: 345 bp
ATGAGCTGCCGACGGGACCGACGACTCCCGAGCAGGGCCAATCGCCGCCGGCAGTGTCGCAGAACAGCACCGTTCCGTTGCCACAAGCGCCGTTGCCGACAAAGTCAACAAAGAAAGTGGCGGTGGCCGTCTCCGTCGGAATCGTCACGCTCGGAATGCTGTCGGGTCTCGCGTTTTTTCTCTACCGCCACCGAGTCAAGCACCCGTCGGAGACTCAGAAACTCGTCAATGGCGGAGGGAGCAGCTCGCAGCGGTTCGCAGACGATTCCAGAGCGGCGCCGTCGAGCTTCCTTTATATCGGCACTGTCGAGCCGAGCCAGAACTCCACGAGCAGCGACGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.42

Weight (kDa)

12.0

Isoelectric Point (pI)

146.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021453)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283231
rosa_roxburghii Rroxscaffold_5G00348040
rosa_samantha Rh2AG196800 Rh2DG204700 Rh6DG260700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 1 cut(s) 172
AciI CCGC 6 cut(s) 46, 121, 186, 233, 252, 274
AcoI YGGCCR 1 cut(s) 125
AcyI GRCGYC 2 cut(s) 277, 338
AfiI CCNNNNNNNGG 1 cut(s) 34
AluBI AGCT 3 cut(s) 6, 245, 287
AluI AGCT 3 cut(s) 6, 245, 287
Alw26I GTCTC 3 cut(s) 135, 172, 205
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 2 cut(s) 36, 125
ApeKI GCWGC 4 cut(s) 6, 242, 249, 332
AspLEI GCGC 2 cut(s) 90, 279
AspS9I GGNCC 2 cut(s) 16, 36
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 276
BauI CACGAG 1 cut(s) 327
BbvI GCAGC 2 cut(s) 254, 261
BceAI ACGGC 3 cut(s) 75, 112, 264
BcoDI GTCTC 3 cut(s) 135, 172, 205
BfoI RGCGCY 2 cut(s) 91, 280
BisI GCNGC 6 cut(s) 7, 46, 243, 250, 275, 333
BlsI GCNGC 6 cut(s) 8, 47, 244, 251, 276, 334
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 16, 36
BmiI GGNNCC 2 cut(s) 17, 278
BsaHI GRCGYC 2 cut(s) 277, 338
BsaI GGTCTC 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 254, 261
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 38, 127
BshNI GGYRCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 3 cut(s) 135, 172, 205
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 2 cut(s) 38, 127
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 28
BspACI CCGC 6 cut(s) 46, 121, 186, 233, 252, 274
BspANI GGCC 2 cut(s) 38, 127
BspCNI CTCAG 1 cut(s) 228
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 17, 278
BspT107I GGYRCC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 48
BssNI GRCGYC 2 cut(s) 277, 338
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 72, 306
BstACI GRCGYC 2 cut(s) 277, 338
BstC8I GCNNGC 2 cut(s) 50, 247
BstDEI CTNAG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 172
BstH2I RGCGCY 2 cut(s) 91, 280
BstHHI GCGC 2 cut(s) 90, 279
BstMAI GTCTC 3 cut(s) 135, 172, 205
BstMWI GCNNNNNNNGC 3 cut(s) 87, 156, 239
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 254, 261
BsuRI GGCC 2 cut(s) 38, 127
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 302
Cac8I GCNNGC 2 cut(s) 50, 247
CfoI GCGC 2 cut(s) 90, 279
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 16, 36
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CviAII CATG 1 cut(s) 342
CviJI RGCY 7 cut(s) 6, 38, 127, 245, 287, 312, 317
CviKI_1 RGCY 7 cut(s) 6, 38, 127, 245, 287, 312, 317
DdeI CTNAG 1 cut(s) 215
DinI GGCGCC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 125
EciI GGCGGA 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 28
EgeI GGCGCC 1 cut(s) 278
EheI GGCGCC 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 345
FaiI YATR 2 cut(s) 296, 343
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 341
Fnu4HI GCNGC 6 cut(s) 7, 46, 243, 250, 275, 333
Fsp4HI GCNGC 6 cut(s) 7, 46, 243, 250, 275, 333
GlaI GCGC 2 cut(s) 89, 278
GluI GCNGC 6 cut(s) 7, 46, 243, 250, 275, 333
HaeII RGCGCY 2 cut(s) 91, 280
HaeIII GGCC 2 cut(s) 38, 127
HapII CCGG 1 cut(s) 49
HhaI GCGC 2 cut(s) 90, 279
Hin1I GRCGYC 2 cut(s) 277, 338
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 2 cut(s) 88, 277
HinP1I GCGC 2 cut(s) 88, 277
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 5 cut(s) 24, 140, 194, 213, 265
HpaII CCGG 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 4 cut(s) 139, 154, 210, 218
Hpy188III TCNNGA 2 cut(s) 28, 269
Hpy8I GTNNAC 1 cut(s) 107
Hpy99I CGWCG 6 cut(s) 15, 24, 139, 210, 285, 340
HpyCH4III ACNGT 2 cut(s) 72, 306
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 156, 239
HpyF3I CTNAG 1 cut(s) 215
Hsp92I GRCGYC 2 cut(s) 277, 338
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 2 cut(s) 88, 277
KasI GGCGCC 1 cut(s) 276
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 19, 62, 282, 331
Lsp1109I GCAGC 2 cut(s) 254, 261
MaeIII GTNAC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 274
Mly113I GGCGCC 1 cut(s) 277
MlyI GAGTC 3 cut(s) 18, 203, 207
MmeI TCCRAC 2 cut(s) 117, 188
MnlI CCTC 1 cut(s) 229
MroNI GCCGGC 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 161
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 3 cut(s) 87, 156, 239
NaeI GCCGGC 1 cut(s) 50
NarI GGCGCC 1 cut(s) 277
NgoMIV GCCGGC 1 cut(s) 48
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 2 cut(s) 17, 278
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 3 cut(s) 19, 169, 305
PctI GAATGC 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 140, 265
PflFI GACNNNGTC 1 cut(s) 102
PkrI GCNGC 6 cut(s) 8, 47, 244, 251, 276, 334
PleI GAGTC 3 cut(s) 18, 202, 207
PluTI GGCGCC 1 cut(s) 280
PpsI GAGTC 3 cut(s) 18, 202, 207
PspN4I GGNNCC 2 cut(s) 17, 278
PspPI GGNCC 2 cut(s) 16, 36
PsyI GACNNNGTC 1 cut(s) 102
SatI GCNGC 6 cut(s) 7, 46, 243, 250, 275, 333
Sau96I GGNCC 2 cut(s) 16, 36
SchI GAGTC 3 cut(s) 18, 203, 207
SetI ASST 3 cut(s) 8, 247, 289
SfoI GGCGCC 1 cut(s) 278
SinI GGWCC 1 cut(s) 16
SsiI CCGC 6 cut(s) 46, 121, 186, 233, 252, 274
SspDI GGCGCC 1 cut(s) 276
TaaI ACNGT 2 cut(s) 72, 306
TaqI TCGA 2 cut(s) 283, 308
TaqII GACCGA 1 cut(s) 33
TauI GCSGC 2 cut(s) 48, 277
TfiI GAWTC 2 cut(s) 140, 265
TscAI CASTG 2 cut(s) 59, 309
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 4 cut(s) 6, 242, 249, 332
Tsp45I GTSAC 1 cut(s) 144
TspGWI ACGGA 2 cut(s) 65, 123
TspRI CASTG 2 cut(s) 59, 309
Tth111I GACNNNGTC 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.