Rroxscaffold_5G00348040

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
19925093 .. 19929453
4361 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00348040.1

Sequence Viewer

Length: 207 bp
ATGGATTGGAAGAAAACAAGGACCGCTATGTCCGTCGGAATCATCACGCTCGAAATGTTGTCCACGCTCACGTTTTTCTCTATTGCCACCGAGTCAAGCACCAATCGGAGACTCGGAAACTCGTTAATGGCAGAGAGAGCAGCTCGCAGTGGTTCGCCGACAATTCCGGAGCGACGCCTTCGAGCTTCCTCTATATCGGCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.46

Weight (kDa)

11.54

Isoelectric Point (pI)

62.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021453)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283231
rosa_roxburghii Rroxscaffold_5G00348040
rosa_samantha Rh2AG196800 Rh2DG204700 Rh6DG260700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 199
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 175
AluBI AGCT 2 cut(s) 143, 185
AluI AGCT 2 cut(s) 143, 185
Alw26I GTCTC 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 103
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BsaHI GRCGYC 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 166
BseAI TCCGGA 1 cut(s) 166
BseXI GCAGC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 166
BspACI CCGC 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 1 cut(s) 183
CviJI RGCY 2 cut(s) 143, 185
CviKI_1 RGCY 2 cut(s) 143, 185
DdeI CTNAG 1 cut(s) 204
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 21
FaiI YATR 2 cut(s) 29, 194
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 175
HinfI GANTC 3 cut(s) 39, 92, 111
HpaII CCGG 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 38, 108, 116
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 2 cut(s) 38, 177
HpyAV CCTTC 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 166
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 1 cut(s) 180
Lsp1109I GCAGC 1 cut(s) 152
MaeII ACGT 1 cut(s) 71
MboII GAAGA 1 cut(s) 22
MluCI AATT 1 cut(s) 162
MlyI GAGTC 2 cut(s) 101, 105
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 1 cut(s) 199
MroI TCCGGA 1 cut(s) 166
MseI TTAA 1 cut(s) 125
MspI CCGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 2 cut(s) 100, 105
PpsI GAGTC 2 cut(s) 100, 105
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 2 cut(s) 101, 105
SetI ASST 4 cut(s) 74, 145, 187, 205
SinI GGWCC 1 cut(s) 21
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 24
TaiI ACGT 1 cut(s) 74
TaqI TCGA 2 cut(s) 51, 181
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 154
TseI GCWGC 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.