RchiOBHm_Chr6g0293331
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020587
Physical Location & Seq
Forward (+)
56050608 .. 56051579
972 bp
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UTR
Exon/CDS
Intron
PRQ26320

Sequence Viewer

Length: 360 bp
ATGAGAGGTGGTGAACATAAAAAGGAGTCCTTCCTTGCCCTCAATCCATTTGGTCAAGTTCCACTGTTCCAGCTTTTGAAGACGGAGATCTTCAGCTCTTTGTTGTGGAGGAATTTGAAGCTAAAGTTTGGTACAATTCTCGATGTGTATGAGACTCGTCTGGGCCAATCGAAATACTTGGGAGGTGACTGCTTCAGCTTGGCAGATCTTCACCACCTTCCAACCACACACTACTTGATGGAAACACAAGCCAAGAAACTGTTCGAATGCTGCCCAAATGTTAGCGCATGGGTTGCTGATATCACGGCAATAAGGCCTGCTTGGGAGCTCACTAAAGTCGTTGCCATGGGAACTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

119

Amino Acids

13.51

Weight (kDa)

8.48

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 45 - 103 1e-10 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020587)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293331
rosa_rugosa Rorug06G0234600
rosa_samantha Rh6AG347600 Rh6BG354700 Rh6CG361300 Rh6DG348000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 76, 178
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 2 cut(s) 79, 118
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 5 cut(s) 73, 96, 121, 198, 328
AluI AGCT 5 cut(s) 73, 96, 121, 198, 328
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 146
AoxI GGCC 2 cut(s) 163, 314
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 23, 197, 203
AsuII TTCGAA 1 cut(s) 264
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 146
BglII AGATCT 2 cut(s) 87, 205
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 257
BshFI GGCC 2 cut(s) 165, 316
BsiHKAI GWGCWC 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 2 cut(s) 165, 316
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 87, 205
Bsp19I CCATGG 1 cut(s) 345
BspANI GGCC 2 cut(s) 165, 316
BspT104I TTCGAA 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 87, 205
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 66, 261
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 2 cut(s) 90, 208
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 2 cut(s) 87, 205
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 87, 205
BstYI RGATCY 2 cut(s) 87, 205
BsuRI GGCC 2 cut(s) 165, 316
BtgI CCRYGG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 288, 346
CviJI RGCY 8 cut(s) 73, 96, 121, 165, 198, 251, 316, 328
CviKI_1 RGCY 8 cut(s) 73, 96, 121, 165, 198, 251, 316, 328
CviQI GTAC 1 cut(s) 132
DpnI GATC 2 cut(s) 89, 207
DpnII GATC 2 cut(s) 87, 205
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 330
Eco32I GATATC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 76, 178
EcoICRI GAGCTC 1 cut(s) 328
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 2 cut(s) 291, 349
FaiI YATR 4 cut(s) 18, 150, 289, 347
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 304, 336
FatI CATG 2 cut(s) 287, 345
Fnu4HI GCNGC 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 271
GlaI GCGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 165, 316
HhaI GCGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 291, 349
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 2 cut(s) 26, 154
HphI GGTGA 3 cut(s) 23, 197, 203
Hpy166II GTNNAC 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 40, 227
HpyCH4III ACNGT 2 cut(s) 66, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
Hsp92II CATG 2 cut(s) 291, 349
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 2 cut(s) 87, 205
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 3 cut(s) 83, 146, 330
Lsp1109I GCAGC 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 185
MalI GATC 2 cut(s) 89, 207
MboI GATC 2 cut(s) 87, 205
MboII GAAGA 3 cut(s) 82, 91, 200
MflI RGATCY 2 cut(s) 87, 205
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 112, 135
MlyI GAGTC 2 cut(s) 35, 148
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 3 cut(s) 50, 102, 176
MroXI GAANNNNTTC 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 293
NcoI CCATGG 1 cut(s) 345
NdeII GATC 2 cut(s) 87, 205
NlaIII CATG 2 cut(s) 291, 349
NmuCI GTSAC 1 cut(s) 185
NspV TTCGAA 1 cut(s) 264
PceI AGGCCT 1 cut(s) 316
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 2 cut(s) 34, 148
PpsI GAGTC 2 cut(s) 34, 148
Psp124BI GAGCTC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 2 cut(s) 87, 205
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacI GAGCTC 1 cut(s) 330
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 87, 205
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 2 cut(s) 35, 148
SduI GDGCHC 1 cut(s) 330
SetI ASST 8 cut(s) 10, 75, 98, 123, 187, 200, 219, 330
SfuI TTCGAA 1 cut(s) 264
Sse9I AATT 2 cut(s) 112, 135
SseBI AGGCCT 1 cut(s) 316
SstI GAGCTC 1 cut(s) 330
StuI AGGCCT 1 cut(s) 316
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 66, 261
TaqI TCGA 3 cut(s) 141, 170, 264
TasI AATT 2 cut(s) 112, 135
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 69
XapI RAATTY 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.