Rh6DG348000
ERF Family

Belongs to the GST superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
54955060 .. 54955344
285 bp
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UTR
Exon/CDS
Intron
Rh6DG348000.1

Sequence Viewer

Length: 285 bp
ATGAAGCCTGCCTTTGGCAAGCCCACAGACTTCGCAGTTGTGGAGGAATTTGAAGCTAAGTTGGGTACAATTCTCGATGTGTATGAGACTCGTCTGGGCCAATCGAAATACTTGGGAGGTGACTGCTTCAGCTTGGCAGATCTTCACCACCTACCAACCATACACTACTTGATGGAAACACAAGCCAAGAAACTGTTCGAATGCCGCCCAAATGTTAGCGCATGGGTAGCTGATATCACAGCAAGGCCTGCTTGGAAAAAAGTCGTTGCCATGAGAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.61

Weight (kDa)

7.81

Isoelectric Point (pI)

28.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 12 - 83 7.4e-14 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 12 - 77 5.3e-07 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 17 - 87 1.7e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020587)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293331
rosa_rugosa Rorug06G0234600
rosa_samantha Rh6AG347600 Rh6BG354700 Rh6CG361300 Rh6DG348000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 112
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 53
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 4 cut(s) 56, 132, 230, 278
AluI AGCT 4 cut(s) 56, 132, 230, 278
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 80
AoxI GGCC 2 cut(s) 97, 245
ApoI RAATTY 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 131, 137
AsuII TTCGAA 1 cut(s) 198
BanII GRGCYC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 280
BccI CCATC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 80
BglII AGATCT 1 cut(s) 139
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 14
BshFI GGCC 2 cut(s) 99, 247
BsiHKAI GWGCWC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 2 cut(s) 99, 247
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 1 cut(s) 205
BspANI GGCC 2 cut(s) 99, 247
BspT104I TTCGAA 1 cut(s) 198
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 9, 20, 249
BstDEI CTNAG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 227, 248, 275
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 99, 247
Cac8I GCNNGC 3 cut(s) 9, 20, 249
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 66
CviAII CATG 2 cut(s) 222, 271
CviJI RGCY 9 cut(s) 7, 22, 56, 99, 132, 185, 230, 247, 278
CviKI_1 RGCY 9 cut(s) 7, 22, 56, 99, 132, 185, 230, 247, 278
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 278
EcoRV GATATC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 2 cut(s) 225, 274
FaiI YATR 4 cut(s) 84, 161, 223, 272
FalI AAGNNNNNCTT 3 cut(s) 28, 235, 267
FatI CATG 2 cut(s) 221, 270
Fnu4HI GCNGC 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 205
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 2 cut(s) 99, 247
HhaI GCGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 225, 274
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 1 cut(s) 88
HphI GGTGA 2 cut(s) 131, 137
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 248, 275
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 225, 274
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 3 cut(s) 21, 80, 261
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 134
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 2 cut(s) 47, 69
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 2 cut(s) 37, 110
MroXI GAANNNNTTC 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 227, 248, 275
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 225, 274
NmuCI GTSAC 1 cut(s) 119
NspV TTCGAA 1 cut(s) 198
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SacI GAGCTC 1 cut(s) 280
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 82
SduI GDGCHC 1 cut(s) 280
SetI ASST 6 cut(s) 58, 121, 134, 153, 232, 280
SfuI TTCGAA 1 cut(s) 198
Sse9I AATT 2 cut(s) 47, 69
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 1 cut(s) 205
SstI GAGCTC 1 cut(s) 280
StuI AGGCCT 1 cut(s) 247
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 75, 104, 198
TasI AATT 2 cut(s) 47, 69
TauI GCSGC 1 cut(s) 207
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.