Rh6AG347600
ERF Family

Belongs to the GST superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
54802918 .. 54803283
366 bp
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UTR
Exon/CDS
Intron
Rh6AG347600.1

Sequence Viewer

Length: 366 bp
ATGGCAATTCTATCAGTGTGGGCAGAGGTGGAGGCTCATACGTTCGACCCACCAGCCTCAAAACTGAAAGATGAGCTTGCTATGAAGCCTTTCCTAGGCTTGGCCACAGACTTCGCAGTTGTGGAGGAATTTGAAGCTAAGTTGGGTAAAATTCTCGATGTCTATGAAACTCGTCTCGGCGAGTCGAAATACTTGGGAGGTGATTGCTTCAGCTTGGCAGATCTTCACCACCTTCCAATAATACACTACTTGATGAGAACACAAGCCAAGAAGCTGTTCGAGTGCCGTCCAAATGTTAGTGCATGGGTAGCTGATATCACAGCAAGGCCTGCTTGGAAAAAAGTCGTTGCCATGAGAGCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

6.41

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 31 - 110 1.1e-14 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 39 - 104 8.2e-07 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 44 - 114 1.3e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020587)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293331
rosa_rugosa Rorug06G0234600
rosa_samantha Rh6AG347600 Rh6BG354700 Rh6CG361300 Rh6DG348000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 128, 150
AcuI CTGAAG 1 cut(s) 193
AfiI CCNNNNNNNGG 2 cut(s) 95, 100
AgsI TTSAA 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 6 cut(s) 76, 137, 213, 274, 311, 359
AluI AGCT 6 cut(s) 76, 137, 213, 274, 311, 359
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 2 cut(s) 102, 326
ApoI RAATTY 2 cut(s) 128, 150
Asp700I GAANNNNTTC 2 cut(s) 89, 275
AspA2I CCTAGG 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 212, 218
AvrII CCTAGG 1 cut(s) 94
BalI TGGCCA 1 cut(s) 104
BceAI ACGGC 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 95
BglII AGATCT 1 cut(s) 220
BlnI CCTAGG 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 100
BseDI CCNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 95, 100
BshFI GGCC 2 cut(s) 104, 328
BslI CCNNNNNNNGG 2 cut(s) 95, 100
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 2 cut(s) 104, 328
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 2 cut(s) 104, 328
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 78, 330
BstDEI CTNAG 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 93
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 308, 329, 356
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 104, 328
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 78, 330
CviAII CATG 2 cut(s) 303, 352
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 328
Eco32I GATATC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 2 cut(s) 306, 355
FaiI YATR 5 cut(s) 39, 83, 165, 304, 353
FalI AAGNNNNNCTT 4 cut(s) 60, 92, 316, 348
FatI CATG 2 cut(s) 302, 351
FspBI CTAG 1 cut(s) 95
HaeIII GGCC 2 cut(s) 104, 328
Hin1II CATG 2 cut(s) 306, 355
HinfI GANTC 1 cut(s) 182
HphI GGTGA 2 cut(s) 212, 218
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 329, 356
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 2 cut(s) 306, 355
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 2 cut(s) 66, 342
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 41
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 6, 128, 150
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 5 cut(s) 19, 25, 67, 118, 191
Mox20I TGGCCA 1 cut(s) 104
MroXI GAANNNNTTC 2 cut(s) 89, 275
MscI TGGCCA 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 308, 329, 356
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 306, 355
NmeAIII GCCGAG 1 cut(s) 156
PceI AGGCCT 1 cut(s) 328
PdmI GAANNNNTTC 2 cut(s) 89, 275
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 220
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 1 cut(s) 191
Sse9I AATT 3 cut(s) 6, 128, 150
SseBI AGGCCT 1 cut(s) 328
SspMI CTAG 1 cut(s) 95
StuI AGGCCT 1 cut(s) 328
StyI CCWWGG 1 cut(s) 94
TaiI ACGT 1 cut(s) 44
TaqI TCGA 4 cut(s) 45, 156, 185, 279
TasI AATT 3 cut(s) 6, 128, 150
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 98, 180
TspRI CASTG 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 2 cut(s) 128, 150
XmaJI CCTAGG 1 cut(s) 94
XmnI GAANNNNTTC 2 cut(s) 89, 275
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.