RchiOBHm_Chr6g0293481

Cleavage and polyadenylation specificity factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022805
Physical Location & Seq
Forward (+)
56151976 .. 56161061
9086 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26333

Sequence Viewer

Length: 336 bp
ATGGGTCAGCTCAAAACAATGCAGAATCATCTCAGGTGTGCTGTTCGGGTCATGGAAAGAATGGTTCGCTGTGTTCTTCCTCGGTCAATTCGTCCAGAAATGATTACTGAGGTTGCACTACCAGGTTGCAAGGGAATTTGGACTGTTTACCATAAGAATGCATGTGGTCATAATGTTGAGTCTTCCGATGATGAGTATCATGCTTTTTTAATTATAAGTCTGGAGGCTCGTACAATGAAATATGATGCTGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTTGGCATCCAAGTTGGGTGTGGATTCAGGTTTAAGATTCAATGTAGGAGATGA

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

9.21

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RSE1_2nd PF23726 32 - 85 3.7e-06 RSE1/DDB1/CPSF1 second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022805)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293481
rosa_multiflora Rmu_sc0001301.1_g000075
rosa_roxburghii Rroxscaffold_1G00000300
rosa_samantha Rh6CG362600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 10, 269
AluI AGCT 2 cut(s) 10, 269
AlwNI CAGNNNCTG 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 257, 266, 269, 272
ApoI RAATTY 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 256, 259, 269, 278
BciT130I CCWGG 1 cut(s) 123
BisI GCNGC 4 cut(s) 258, 267, 270, 273
BlsI GCNGC 4 cut(s) 259, 268, 271, 274
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 235, 297
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 80, 283
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 80, 283
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 2 cut(s) 46, 99
BseXI GCAGC 4 cut(s) 256, 259, 269, 278
BseYI CCCAGC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 45, 100
BssECI CCNNGG 2 cut(s) 80, 283
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 145, 280
BstAPI GCANNNNNTGC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 32, 108
BstF5I GGATG 1 cut(s) 288
BstMWI GCNNNNNNNGC 4 cut(s) 254, 263, 266, 272
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 4 cut(s) 256, 259, 269, 278
BstV2I GAAGAC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 272
CsiI ACCWGGT 1 cut(s) 121
Csp6I GTAC 1 cut(s) 231
CviAII CATG 3 cut(s) 52, 162, 200
CviJI RGCY 3 cut(s) 10, 227, 269
CviKI_1 RGCY 3 cut(s) 10, 227, 269
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 32, 108
Eco130I CCWWGG 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 3 cut(s) 55, 165, 203
FaiI YATR 7 cut(s) 53, 153, 163, 171, 201, 215, 243
FatI CATG 3 cut(s) 51, 161, 199
Fnu4HI GCNGC 4 cut(s) 258, 267, 270, 273
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 258, 267, 270, 273
GluI GCNGC 4 cut(s) 258, 267, 270, 273
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 242
Hin1II CATG 3 cut(s) 55, 165, 203
HinfI GANTC 4 cut(s) 25, 179, 306, 319
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 95, 221
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 145, 280
HpyCH4V TGCA 5 cut(s) 22, 116, 129, 161, 275
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 263, 266, 272
HpyF3I CTNAG 2 cut(s) 32, 108
Hsp92II CATG 3 cut(s) 55, 165, 203
LpnPI CCDG 7 cut(s) 19, 108, 108, 135, 206, 267, 295
Lsp1109I GCAGC 4 cut(s) 256, 259, 269, 278
LweI GCATC 2 cut(s) 235, 297
MabI ACCWGGT 1 cut(s) 121
MboII GAAGA 2 cut(s) 68, 174
MluCI AATT 3 cut(s) 87, 135, 210
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 3 cut(s) 90, 103, 217
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 2 cut(s) 209, 315
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 254, 263, 266, 272
NlaIII CATG 3 cut(s) 55, 165, 203
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 25, 306, 319
PkrI GCNGC 4 cut(s) 259, 268, 271, 274
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PsiI TTATAA 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 209, 315
SatI GCNGC 4 cut(s) 258, 267, 270, 273
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 123
SetI ASST 6 cut(s) 12, 38, 114, 127, 271, 314
SexAI ACCWGGT 1 cut(s) 121
SfaNI GCATC 2 cut(s) 235, 297
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 3 cut(s) 87, 135, 210
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 145, 280
TaqII GACCGA 1 cut(s) 72
TasI AATT 3 cut(s) 87, 135, 210
TfiI GAWTC 3 cut(s) 25, 306, 319
Tru1I TTAA 2 cut(s) 209, 315
Tru9I TTAA 2 cut(s) 209, 315
TseI GCWGC 4 cut(s) 257, 266, 269, 272
TspDTI ATGAA 1 cut(s) 251
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.