Cleavage and polyadenylation specificity factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0293481 |
| rosa_multiflora | Rmu_sc0001301.1_g000075 |
| rosa_roxburghii | Rroxscaffold_1G00000300 |
| rosa_samantha | Rh6CG362600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 767 |
| AatII | GACGTC | 1 cut(s) | 1040 |
| AccB1I | GGYRCC | 1 cut(s) | 165 |
| AccBSI | CCGCTC | 1 cut(s) | 270 |
| AccI | GTMKAC | 1 cut(s) | 64 |
| AciI | CCGC | 6 cut(s) | 22, 256, 268, 289, 928, 990 |
| AclWI | GGATC | 2 cut(s) | 956, 1117 |
| AcsI | RAATTY | 4 cut(s) | 347, 397, 687, 1218 |
| AcyI | GRCGYC | 2 cut(s) | 166, 1037 |
| AfaI | GTAC | 2 cut(s) | 216, 784 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 963, 989 |
| AflIII | ACRYGT | 1 cut(s) | 407 |
| AgsI | TTSAA | 4 cut(s) | 55, 508, 1052, 1134 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 197 |
| AjnI | CCWGG | 1 cut(s) | 673 |
| AluBI | AGCT | 5 cut(s) | 179, 275, 1060, 1069, 1207 |
| AluI | AGCT | 5 cut(s) | 179, 275, 1060, 1069, 1207 |
| Alw21I | GWGCWC | 1 cut(s) | 1071 |
| Alw26I | GTCTC | 2 cut(s) | 926, 958 |
| AlwI | GGATC | 2 cut(s) | 956, 1117 |
| AoxI | GGCC | 2 cut(s) | 17, 221 |
| ApeKI | GCWGC | 3 cut(s) | 454, 809, 1076 |
| ApoI | RAATTY | 4 cut(s) | 347, 397, 687, 1218 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 512 |
| AspLEI | GCGC | 2 cut(s) | 168, 995 |
| AspS9I | GGNCC | 4 cut(s) | 18, 222, 500, 693 |
| AsuC2I | CCSGG | 3 cut(s) | 26, 220, 896 |
| AsuHPI | GGTGA | 3 cut(s) | 164, 275, 296 |
| AsuII | TTCGAA | 1 cut(s) | 1009 |
| AvaII | GGWCC | 2 cut(s) | 500, 693 |
| BanI | GGYRCC | 1 cut(s) | 165 |
| BanII | GRGCYC | 1 cut(s) | 1071 |
| BbsI | GAAGAC | 1 cut(s) | 726 |
| Bbv12I | GWGCWC | 1 cut(s) | 1071 |
| BbvI | GCAGC | 3 cut(s) | 466, 821, 1088 |
| BccI | CCATC | 2 cut(s) | 300, 352 |
| BceAI | ACGGC | 2 cut(s) | 112, 1173 |
| BciT130I | CCWGG | 1 cut(s) | 675 |
| BcnI | CCSGG | 3 cut(s) | 26, 220, 896 |
| BcoDI | GTCTC | 2 cut(s) | 926, 958 |
| BfaI | CTAG | 5 cut(s) | 197, 375, 426, 986, 1208 |
| BfoI | RGCGCY | 1 cut(s) | 169 |
| BisI | GCNGC | 6 cut(s) | 257, 455, 810, 929, 991, 1077 |
| BlpI | GCTNAGC | 1 cut(s) | 271 |
| BlsI | GCNGC | 6 cut(s) | 258, 456, 811, 930, 992, 1078 |
| Bme1390I | CCNGG | 4 cut(s) | 26, 220, 675, 896 |
| Bme18I | GGWCC | 2 cut(s) | 500, 693 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 197 |
| BmgT120I | GGNCC | 4 cut(s) | 18, 222, 500, 693 |
| BmiI | GGNNCC | 3 cut(s) | 20, 167, 224 |
| BmrFI | CCNGG | 4 cut(s) | 26, 220, 675, 896 |
| BmsI | GCATC | 6 cut(s) | 108, 127, 268, 532, 787, 849 |
| BpiI | GAAGAC | 1 cut(s) | 726 |
| BpmI | CTGGAG | 1 cut(s) | 794 |
| Bpu10I | CCTNAGC | 1 cut(s) | 527 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 271 |
| Bpu14I | TTCGAA | 1 cut(s) | 1009 |
| BpuEI | CTTGAG | 2 cut(s) | 434, 497 |
| BpuMI | CCSGG | 3 cut(s) | 26, 220, 896 |
| Bsa29I | ATCGAT | 1 cut(s) | 1112 |
| BsaAI | YACGTR | 1 cut(s) | 1120 |
| BsaBI | GATNNNNATC | 2 cut(s) | 192, 747 |
| BsaHI | GRCGYC | 2 cut(s) | 166, 1037 |
| BsaJI | CCNNGG | 3 cut(s) | 218, 835, 1094 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 963, 989 |
| Bse118I | RCCGGY | 2 cut(s) | 15, 171 |
| Bse1I | ACTGG | 4 cut(s) | 167, 559, 588, 826 |
| Bse8I | GATNNNNATC | 2 cut(s) | 192, 747 |
| BseBI | CCWGG | 1 cut(s) | 675 |
| BseCI | ATCGAT | 1 cut(s) | 1112 |
| BseDI | CCNNGG | 3 cut(s) | 218, 835, 1094 |
| BseGI | GGATG | 2 cut(s) | 643, 840 |
| BseJI | GATNNNNATC | 2 cut(s) | 192, 747 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 963, 989 |
| BseMII | CTCAG | 7 cut(s) | 241, 285, 651, 720, 1084, 1151, 1155 |
| BseNI | ACTGG | 4 cut(s) | 167, 559, 588, 826 |
| BseRI | GAGGAG | 2 cut(s) | 270, 946 |
| BseXI | GCAGC | 3 cut(s) | 466, 821, 1088 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1019 |
| BshFI | GGCC | 2 cut(s) | 19, 223 |
| BshNI | GGYRCC | 1 cut(s) | 165 |
| BshVI | ATCGAT | 1 cut(s) | 1112 |
| BsiEI | CGRYCG | 1 cut(s) | 1019 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1071 |
| BsiSI | CCGG | 6 cut(s) | 16, 25, 172, 220, 896, 905 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 963, 989 |
| BsmAI | GTCTC | 2 cut(s) | 926, 958 |
| BsmBI | CGTCTC | 1 cut(s) | 958 |
| BsnI | GGCC | 2 cut(s) | 19, 223 |
| Bsp119I | TTCGAA | 1 cut(s) | 1009 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1071 |
| Bsp143I | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 271 |
| BspACI | CCGC | 6 cut(s) | 22, 256, 268, 289, 928, 990 |
| BspANI | GGCC | 2 cut(s) | 19, 223 |
| BspCNI | CTCAG | 7 cut(s) | 240, 284, 652, 721, 1083, 1150, 1156 |
| BspDI | ATCGAT | 1 cut(s) | 1112 |
| BspLI | GGNNCC | 3 cut(s) | 20, 167, 224 |
| BspPI | GGATC | 2 cut(s) | 956, 1117 |
| BspT104I | TTCGAA | 1 cut(s) | 1009 |
| BspT107I | GGYRCC | 1 cut(s) | 165 |
| BsrBI | CCGCTC | 1 cut(s) | 270 |
| BsrFI | RCCGGY | 2 cut(s) | 15, 171 |
| BsrI | ACTGG | 4 cut(s) | 167, 559, 588, 826 |
| BssAI | RCCGGY | 2 cut(s) | 15, 171 |
| BssECI | CCNNGG | 3 cut(s) | 218, 835, 1094 |
| BssMI | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| BssNI | GRCGYC | 2 cut(s) | 166, 1037 |
| BssT1I | CCWWGG | 2 cut(s) | 835, 1094 |
| Bst2UI | CCWGG | 1 cut(s) | 675 |
| Bst4CI | ACNGT | 5 cut(s) | 308, 832, 878, 920, 1152 |
| BstACI | GRCGYC | 2 cut(s) | 166, 1037 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 253, 460, 824 |
| BstBAI | YACGTR | 1 cut(s) | 1120 |
| BstBI | TTCGAA | 1 cut(s) | 1009 |
| BstC8I | GCNNGC | 2 cut(s) | 177, 1230 |
| BstDEI | CTNAG | 9 cut(s) | 227, 271, 527, 660, 729, 1070, 1137, 1164, 1233 |
| BstF5I | GGATG | 2 cut(s) | 643, 840 |
| BstH2I | RGCGCY | 1 cut(s) | 169 |
| BstHHI | GCGC | 2 cut(s) | 168, 995 |
| BstKTI | GATC | 6 cut(s) | 190, 951, 1019, 1031, 1089, 1112 |
| BstMAI | GTCTC | 2 cut(s) | 926, 958 |
| BstMBI | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| BstMCI | CGRYCG | 1 cut(s) | 1019 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 172, 253, 460, 806, 815, 824, 905, 1066 |
| BstNI | CCWGG | 1 cut(s) | 675 |
| BstNSI | RCATGY | 3 cut(s) | 411, 717, 1232 |
| BstSCI | CCNGG | 4 cut(s) | 24, 218, 673, 894 |
| BstSNI | TACGTA | 1 cut(s) | 1120 |
| BstV1I | GCAGC | 3 cut(s) | 466, 821, 1088 |
| BstV2I | GAAGAC | 1 cut(s) | 726 |
| Bsu15I | ATCGAT | 1 cut(s) | 1112 |
| BsuRI | GGCC | 2 cut(s) | 19, 223 |
| BsuTUI | ATCGAT | 1 cut(s) | 1112 |
| BtsCI | GGATG | 2 cut(s) | 643, 840 |
| BtsIMutI | CAGTG | 1 cut(s) | 160 |
| Cac8I | GCNNGC | 2 cut(s) | 177, 1230 |
| CfoI | GCGC | 2 cut(s) | 168, 995 |
| Cfr10I | RCCGGY | 2 cut(s) | 15, 171 |
| Cfr13I | GGNCC | 4 cut(s) | 18, 222, 500, 693 |
| ClaI | ATCGAT | 1 cut(s) | 1112 |
| CseI | GACGC | 1 cut(s) | 50 |
| CsiI | ACCWGGT | 1 cut(s) | 673 |
| Csp6I | GTAC | 2 cut(s) | 215, 783 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 72, 107 |
| CviAII | CATG | 7 cut(s) | 128, 146, 408, 602, 714, 752, 1229 |
| CviQI | GTAC | 2 cut(s) | 215, 783 |
| DdeI | CTNAG | 9 cut(s) | 227, 271, 527, 660, 729, 1070, 1137, 1164, 1233 |
| DinI | GGCGCC | 1 cut(s) | 167 |
| DpnI | GATC | 6 cut(s) | 189, 950, 1018, 1030, 1088, 1111 |
| DpnII | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| DriI | GACNNNNNGTC | 1 cut(s) | 197 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 197 |
| Ecl136II | GAGCTC | 1 cut(s) | 1069 |
| Eco105I | TACGTA | 1 cut(s) | 1120 |
| Eco130I | CCWWGG | 2 cut(s) | 835, 1094 |
| Eco24I | GRGCYC | 1 cut(s) | 1071 |
| Eco47I | GGWCC | 2 cut(s) | 500, 693 |
| Eco53kI | GAGCTC | 1 cut(s) | 1069 |
| EcoICRI | GAGCTC | 1 cut(s) | 1069 |
| EcoRI | GAATTC | 2 cut(s) | 397, 1218 |
| EcoRII | CCWGG | 1 cut(s) | 673 |
| EcoT14I | CCWWGG | 2 cut(s) | 835, 1094 |
| EcoT38I | GRGCYC | 1 cut(s) | 1071 |
| EgeI | GGCGCC | 1 cut(s) | 167 |
| EheI | GGCGCC | 1 cut(s) | 167 |
| ErhI | CCWWGG | 2 cut(s) | 835, 1094 |
| Esp3I | CGTCTC | 1 cut(s) | 958 |
| FaeI | CATG | 7 cut(s) | 131, 149, 411, 605, 717, 755, 1232 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1044, 1076 |
| FatI | CATG | 7 cut(s) | 127, 145, 407, 601, 713, 751, 1228 |
| FauI | CCCGC | 1 cut(s) | 29 |
| FauNDI | CATATG | 1 cut(s) | 459 |
| FblI | GTMKAC | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 6 cut(s) | 257, 455, 810, 929, 991, 1077 |
| FokI | GGATG | 2 cut(s) | 630, 827 |
| FriOI | GRGCYC | 1 cut(s) | 1071 |
| Fsp4HI | GCNGC | 6 cut(s) | 257, 455, 810, 929, 991, 1077 |
| FspBI | CTAG | 5 cut(s) | 197, 375, 426, 986, 1208 |
| GlaI | GCGC | 2 cut(s) | 167, 994 |
| GluI | GCNGC | 6 cut(s) | 257, 455, 810, 929, 991, 1077 |
| GsuI | CTGGAG | 1 cut(s) | 794 |
| HaeII | RGCGCY | 1 cut(s) | 169 |
| HaeIII | GGCC | 2 cut(s) | 19, 223 |
| HapII | CCGG | 6 cut(s) | 16, 25, 172, 220, 896, 905 |
| HgaI | GACGC | 1 cut(s) | 50 |
| HhaI | GCGC | 2 cut(s) | 168, 995 |
| Hin1I | GRCGYC | 2 cut(s) | 166, 1037 |
| Hin1II | CATG | 7 cut(s) | 131, 149, 411, 605, 717, 755, 1232 |
| Hin6I | GCGC | 2 cut(s) | 166, 993 |
| HinP1I | GCGC | 2 cut(s) | 166, 993 |
| HincII | GTYRAC | 3 cut(s) | 13, 33, 65 |
| HindII | GTYRAC | 3 cut(s) | 13, 33, 65 |
| HinfI | GANTC | 4 cut(s) | 66, 483, 731, 858 |
| HpaII | CCGG | 6 cut(s) | 16, 25, 172, 220, 896, 905 |
| HphI | GGTGA | 3 cut(s) | 164, 275, 296 |
| Hpy166II | GTNNAC | 7 cut(s) | 13, 33, 65, 94, 155, 241, 1155 |
| Hpy188I | TCNGA | 7 cut(s) | 739, 863, 1028, 1035, 1073, 1140, 1165 |
| Hpy188III | TCNNGA | 5 cut(s) | 433, 476, 647, 773, 941 |
| Hpy8I | GTNNAC | 7 cut(s) | 13, 33, 65, 94, 155, 241, 1155 |
| Hpy99I | CGWCG | 2 cut(s) | 66, 1039 |
| HpyAV | CCTTC | 2 cut(s) | 308, 502 |
| HpyCH4III | ACNGT | 5 cut(s) | 308, 832, 878, 920, 1152 |
| HpyCH4IV | ACGT | 2 cut(s) | 1037, 1119 |
| HpyCH4V | TGCA | 8 cut(s) | 140, 463, 539, 545, 668, 681, 713, 827 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 172, 253, 460, 806, 815, 824, 905, 1066 |
| HpyF3I | CTNAG | 9 cut(s) | 227, 271, 527, 660, 729, 1070, 1137, 1164, 1233 |
| HpySE526I | ACGT | 2 cut(s) | 1037, 1119 |
| Hsp92I | GRCGYC | 2 cut(s) | 166, 1037 |
| Hsp92II | CATG | 7 cut(s) | 131, 149, 411, 605, 717, 755, 1232 |
| HspAI | GCGC | 2 cut(s) | 166, 993 |
| KasI | GGCGCC | 1 cut(s) | 165 |
| Kzo9I | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| LmnI | GCTCC | 1 cut(s) | 1066 |
| Lsp1109I | GCAGC | 3 cut(s) | 466, 821, 1088 |
| LweI | GCATC | 6 cut(s) | 108, 127, 268, 532, 787, 849 |
| MabI | ACCWGGT | 1 cut(s) | 673 |
| MaeI | CTAG | 5 cut(s) | 197, 375, 426, 986, 1208 |
| MaeII | ACGT | 2 cut(s) | 1037, 1119 |
| MaeIII | GTNAC | 1 cut(s) | 302 |
| MalI | GATC | 6 cut(s) | 189, 950, 1018, 1030, 1088, 1111 |
| MbiI | CCGCTC | 1 cut(s) | 270 |
| MboI | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| MboII | GAAGA | 3 cut(s) | 425, 726, 881 |
| MhlI | GDGCHC | 1 cut(s) | 1071 |
| Mly113I | GGCGCC | 1 cut(s) | 166 |
| MlyI | GAGTC | 2 cut(s) | 60, 740 |
| MmeI | TCCRAC | 1 cut(s) | 1058 |
| MroXI | GAANNNNTTC | 1 cut(s) | 512 |
| MseI | TTAA | 3 cut(s) | 345, 492, 761 |
| MslI | CAYNNNNRTG | 3 cut(s) | 150, 708, 1227 |
| MspI | CCGG | 6 cut(s) | 16, 25, 172, 220, 896, 905 |
| MspR9I | CCNGG | 4 cut(s) | 26, 220, 675, 896 |
| MvaI | CCWGG | 1 cut(s) | 675 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 172, 253, 460, 806, 815, 824, 905, 1066 |
| NarI | GGCGCC | 1 cut(s) | 166 |
| NciI | CCSGG | 3 cut(s) | 26, 220, 896 |
| NdeI | CATATG | 1 cut(s) | 459 |
| NdeII | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| NlaIII | CATG | 7 cut(s) | 131, 149, 411, 605, 717, 755, 1232 |
| NlaIV | GGNNCC | 3 cut(s) | 20, 167, 224 |
| NmuCI | GTSAC | 1 cut(s) | 302 |
| NspI | RCATGY | 3 cut(s) | 411, 717, 1232 |
| NspV | TTCGAA | 1 cut(s) | 1009 |
| PaeI | GCATGC | 1 cut(s) | 1232 |
| PciI | ACATGT | 1 cut(s) | 407 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 102, 957 |
| PdmI | GAANNNNTTC | 1 cut(s) | 512 |
| PfeI | GAWTC | 2 cut(s) | 483, 858 |
| PkrI | GCNGC | 6 cut(s) | 258, 456, 811, 930, 992, 1078 |
| Ple19I | CGATCG | 1 cut(s) | 1019 |
| PleI | GAGTC | 2 cut(s) | 60, 739 |
| PluTI | GGCGCC | 1 cut(s) | 169 |
| PpsI | GAGTC | 2 cut(s) | 60, 739 |
| Ppu21I | YACGTR | 1 cut(s) | 1120 |
| PscI | ACATGT | 1 cut(s) | 407 |
| PsiI | TTATAA | 1 cut(s) | 767 |
| Psp124BI | GAGCTC | 1 cut(s) | 1071 |
| Psp6I | CCWGG | 1 cut(s) | 673 |
| PspGI | CCWGG | 1 cut(s) | 673 |
| PspN4I | GGNNCC | 3 cut(s) | 20, 167, 224 |
| PspPI | GGNCC | 4 cut(s) | 18, 222, 500, 693 |
| PvuI | CGATCG | 1 cut(s) | 1019 |
| RsaI | GTAC | 2 cut(s) | 216, 784 |
| RsaNI | GTAC | 2 cut(s) | 215, 783 |
| RseI | CAYNNNNRTG | 3 cut(s) | 150, 708, 1227 |
| SacI | GAGCTC | 1 cut(s) | 1071 |
| SalI | GTCGAC | 1 cut(s) | 63 |
| SaqAI | TTAA | 3 cut(s) | 345, 492, 761 |
| SatI | GCNGC | 6 cut(s) | 257, 455, 810, 929, 991, 1077 |
| Sau3AI | GATC | 6 cut(s) | 187, 948, 1016, 1028, 1086, 1109 |
| Sau96I | GGNCC | 4 cut(s) | 18, 222, 500, 693 |
| SchI | GAGTC | 2 cut(s) | 60, 740 |
| ScrFI | CCNGG | 4 cut(s) | 26, 220, 675, 896 |
| SduI | GDGCHC | 1 cut(s) | 1071 |
| SexAI | ACCWGGT | 1 cut(s) | 673 |
| SfaNI | GCATC | 6 cut(s) | 108, 127, 268, 532, 787, 849 |
| SfoI | GGCGCC | 1 cut(s) | 167 |
| SfuI | TTCGAA | 1 cut(s) | 1009 |
| SinI | GGWCC | 2 cut(s) | 500, 693 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 150, 708, 1227 |
| SmlI | CTYRAG | 2 cut(s) | 449, 476 |
| SmoI | CTYRAG | 2 cut(s) | 449, 476 |
| SnaBI | TACGTA | 1 cut(s) | 1120 |
| SphI | GCATGC | 1 cut(s) | 1232 |
| SsiI | CCGC | 6 cut(s) | 22, 256, 268, 289, 928, 990 |
| SspDI | GGCGCC | 1 cut(s) | 165 |
| SspMI | CTAG | 5 cut(s) | 197, 375, 426, 986, 1208 |
| SstI | GAGCTC | 1 cut(s) | 1071 |
| StyD4I | CCNGG | 4 cut(s) | 24, 218, 673, 894 |
| StyI | CCWWGG | 2 cut(s) | 835, 1094 |
| TaaI | ACNGT | 5 cut(s) | 308, 832, 878, 920, 1152 |
| TaiI | ACGT | 2 cut(s) | 1040, 1122 |
| TaqI | TCGA | 7 cut(s) | 64, 69, 190, 1009, 1089, 1112, 1203 |
| TaqII | GACCGA | 1 cut(s) | 50 |
| TauI | GCSGC | 3 cut(s) | 259, 931, 993 |
| TfiI | GAWTC | 2 cut(s) | 483, 858 |
| Tru1I | TTAA | 3 cut(s) | 345, 492, 761 |
| Tru9I | TTAA | 3 cut(s) | 345, 492, 761 |
| TscAI | CASTG | 1 cut(s) | 167 |
| TseFI | GTSAC | 1 cut(s) | 302 |
| TseI | GCWGC | 3 cut(s) | 454, 809, 1076 |
| Tsp45I | GTSAC | 1 cut(s) | 302 |
| TspDTI | ATGAA | 4 cut(s) | 144, 594, 632, 803 |
| TspGWI | ACGGA | 1 cut(s) | 949 |
| TspRI | CASTG | 1 cut(s) | 167 |
| VpaK11BI | GGWCC | 2 cut(s) | 500, 693 |
| XapI | RAATTY | 4 cut(s) | 347, 397, 687, 1218 |
| XceI | RCATGY | 3 cut(s) | 411, 717, 1232 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 851 |
| XmiI | GTMKAC | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 512 |
| XspI | CTAG | 5 cut(s) | 197, 375, 426, 986, 1208 |
| ZraI | GACGTC | 1 cut(s) | 1038 |