Rmu_sc0001301.1_g000075

Cleavage and polyadenylation specificity factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001301.1
Physical Location & Seq
Forward (+)
390021 .. 399996
9976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001301.1_g000075.1.cds

Sequence Viewer

Length: 1236 bp
atgttgggagttgaccggccccgccgggtgttgaccgaccccaatttgatgttgaatgagcgtcgactcgacattttcgggtcaaagttcgtggacggcatcaacgagagaaaaagagagagaagccatgaacacgatgcactacatggaggtgaacaccactggcgccaccggcaagctcaacgagatcgacatctagtctggcgaggtcttgtaccccggcccctcagtaaaggtgtgaaccagcaaggtctgcggcatcttatccgctcagcttctcctcaccaccgccatctccttcgtcaccgttctctacacttctgtcaaggtttggtttggacaattaaatttgatgagatggaaatggcaaaggctagtgaggaagttgtggtggagaattctaatacatgtgaagaatgtggtgctagtgtcaagaaacctgaatatctcaagcagcatatgcaaagccattctcttgagggattctttgttaatgttggtcctttgaaggacttctcttatgggctaaggataaatgcagatgcaaatgctactggaattgctaaacagagcaattatgaactggtgtgttgttcgggtcatggaaataatggttcgctctgtgttctttgtcagtcaattcatccagaaatgattactgaggttgcactaccaggttgcaagggaatttggaccatttaccataagagtgcatgtggtcataatgctgagtcttccgatgatgagtatcatgcttttttaattataagtctggaggctcgtacaatgaaatatgatgctgaccaagcagcaaaggcaactggtgcaactgtccttggcatccaagttgggtgtggattcagaaacgaagaaaaccgtttgaccctacctgacccggcttttccggcgaactgcgacagtctcctgcggcgaaactttccagataggatcgtctcctccgtttggtcgtccttgtggtgtcctctaggcggcgcagttgggtgttttcgaacccgatcggttctccgatctccgacgtctgtggggcttcaagttgagcttggggagctcagagcagcctccttgatcgacccttggtggttgtttggatcgatttacgtaaaacttggttcaactcagattggattactgtttacggcttctgaggtagtttttgaccctttatgcttgttttctaacttcgagctagttatgagaattcacaagcatgcttag

Protein Analysis

411

Amino Acids

46.18

Weight (kDa)

8.18

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022805)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293481
rosa_multiflora Rmu_sc0001301.1_g000075
rosa_roxburghii Rroxscaffold_1G00000300
rosa_samantha Rh6CG362600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 767
AatII GACGTC 1 cut(s) 1040
AccB1I GGYRCC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 64
AciI CCGC 6 cut(s) 22, 256, 268, 289, 928, 990
AclWI GGATC 2 cut(s) 956, 1117
AcsI RAATTY 4 cut(s) 347, 397, 687, 1218
AcyI GRCGYC 2 cut(s) 166, 1037
AfaI GTAC 2 cut(s) 216, 784
AfiI CCNNNNNNNGG 2 cut(s) 963, 989
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 4 cut(s) 55, 508, 1052, 1134
AhdI GACNNNNNGTC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 5 cut(s) 179, 275, 1060, 1069, 1207
AluI AGCT 5 cut(s) 179, 275, 1060, 1069, 1207
Alw21I GWGCWC 1 cut(s) 1071
Alw26I GTCTC 2 cut(s) 926, 958
AlwI GGATC 2 cut(s) 956, 1117
AoxI GGCC 2 cut(s) 17, 221
ApeKI GCWGC 3 cut(s) 454, 809, 1076
ApoI RAATTY 4 cut(s) 347, 397, 687, 1218
Asp700I GAANNNNTTC 1 cut(s) 512
AspLEI GCGC 2 cut(s) 168, 995
AspS9I GGNCC 4 cut(s) 18, 222, 500, 693
AsuC2I CCSGG 3 cut(s) 26, 220, 896
AsuHPI GGTGA 3 cut(s) 164, 275, 296
AsuII TTCGAA 1 cut(s) 1009
AvaII GGWCC 2 cut(s) 500, 693
BanI GGYRCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 1071
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 1071
BbvI GCAGC 3 cut(s) 466, 821, 1088
BccI CCATC 2 cut(s) 300, 352
BceAI ACGGC 2 cut(s) 112, 1173
BciT130I CCWGG 1 cut(s) 675
BcnI CCSGG 3 cut(s) 26, 220, 896
BcoDI GTCTC 2 cut(s) 926, 958
BfaI CTAG 5 cut(s) 197, 375, 426, 986, 1208
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 6 cut(s) 257, 455, 810, 929, 991, 1077
BlpI GCTNAGC 1 cut(s) 271
BlsI GCNGC 6 cut(s) 258, 456, 811, 930, 992, 1078
Bme1390I CCNGG 4 cut(s) 26, 220, 675, 896
Bme18I GGWCC 2 cut(s) 500, 693
BmeRI GACNNNNNGTC 1 cut(s) 197
BmgT120I GGNCC 4 cut(s) 18, 222, 500, 693
BmiI GGNNCC 3 cut(s) 20, 167, 224
BmrFI CCNGG 4 cut(s) 26, 220, 675, 896
BmsI GCATC 6 cut(s) 108, 127, 268, 532, 787, 849
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 794
Bpu10I CCTNAGC 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 1009
BpuEI CTTGAG 2 cut(s) 434, 497
BpuMI CCSGG 3 cut(s) 26, 220, 896
Bsa29I ATCGAT 1 cut(s) 1112
BsaAI YACGTR 1 cut(s) 1120
BsaBI GATNNNNATC 2 cut(s) 192, 747
BsaHI GRCGYC 2 cut(s) 166, 1037
BsaJI CCNNGG 3 cut(s) 218, 835, 1094
Bsc4I CCNNNNNNNGG 2 cut(s) 963, 989
Bse118I RCCGGY 2 cut(s) 15, 171
Bse1I ACTGG 4 cut(s) 167, 559, 588, 826
Bse8I GATNNNNATC 2 cut(s) 192, 747
BseBI CCWGG 1 cut(s) 675
BseCI ATCGAT 1 cut(s) 1112
BseDI CCNNGG 3 cut(s) 218, 835, 1094
BseGI GGATG 2 cut(s) 643, 840
BseJI GATNNNNATC 2 cut(s) 192, 747
BseLI CCNNNNNNNGG 2 cut(s) 963, 989
BseMII CTCAG 7 cut(s) 241, 285, 651, 720, 1084, 1151, 1155
BseNI ACTGG 4 cut(s) 167, 559, 588, 826
BseRI GAGGAG 2 cut(s) 270, 946
BseXI GCAGC 3 cut(s) 466, 821, 1088
Bsh1285I CGRYCG 1 cut(s) 1019
BshFI GGCC 2 cut(s) 19, 223
BshNI GGYRCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 1112
BsiEI CGRYCG 1 cut(s) 1019
BsiHKAI GWGCWC 1 cut(s) 1071
BsiSI CCGG 6 cut(s) 16, 25, 172, 220, 896, 905
BslI CCNNNNNNNGG 2 cut(s) 963, 989
BsmAI GTCTC 2 cut(s) 926, 958
BsmBI CGTCTC 1 cut(s) 958
BsnI GGCC 2 cut(s) 19, 223
Bsp119I TTCGAA 1 cut(s) 1009
Bsp1286I GDGCHC 1 cut(s) 1071
Bsp143I GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
Bsp1720I GCTNAGC 1 cut(s) 271
BspACI CCGC 6 cut(s) 22, 256, 268, 289, 928, 990
BspANI GGCC 2 cut(s) 19, 223
BspCNI CTCAG 7 cut(s) 240, 284, 652, 721, 1083, 1150, 1156
BspDI ATCGAT 1 cut(s) 1112
BspLI GGNNCC 3 cut(s) 20, 167, 224
BspPI GGATC 2 cut(s) 956, 1117
BspT104I TTCGAA 1 cut(s) 1009
BspT107I GGYRCC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 270
BsrFI RCCGGY 2 cut(s) 15, 171
BsrI ACTGG 4 cut(s) 167, 559, 588, 826
BssAI RCCGGY 2 cut(s) 15, 171
BssECI CCNNGG 3 cut(s) 218, 835, 1094
BssMI GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
BssNI GRCGYC 2 cut(s) 166, 1037
BssT1I CCWWGG 2 cut(s) 835, 1094
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 5 cut(s) 308, 832, 878, 920, 1152
BstACI GRCGYC 2 cut(s) 166, 1037
BstAPI GCANNNNNTGC 3 cut(s) 253, 460, 824
BstBAI YACGTR 1 cut(s) 1120
BstBI TTCGAA 1 cut(s) 1009
BstC8I GCNNGC 2 cut(s) 177, 1230
BstDEI CTNAG 9 cut(s) 227, 271, 527, 660, 729, 1070, 1137, 1164, 1233
BstF5I GGATG 2 cut(s) 643, 840
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 2 cut(s) 168, 995
BstKTI GATC 6 cut(s) 190, 951, 1019, 1031, 1089, 1112
BstMAI GTCTC 2 cut(s) 926, 958
BstMBI GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
BstMCI CGRYCG 1 cut(s) 1019
BstMWI GCNNNNNNNGC 8 cut(s) 172, 253, 460, 806, 815, 824, 905, 1066
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 3 cut(s) 411, 717, 1232
BstSCI CCNGG 4 cut(s) 24, 218, 673, 894
BstSNI TACGTA 1 cut(s) 1120
BstV1I GCAGC 3 cut(s) 466, 821, 1088
BstV2I GAAGAC 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 1112
BsuRI GGCC 2 cut(s) 19, 223
BsuTUI ATCGAT 1 cut(s) 1112
BtsCI GGATG 2 cut(s) 643, 840
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 177, 1230
CfoI GCGC 2 cut(s) 168, 995
Cfr10I RCCGGY 2 cut(s) 15, 171
Cfr13I GGNCC 4 cut(s) 18, 222, 500, 693
ClaI ATCGAT 1 cut(s) 1112
CseI GACGC 1 cut(s) 50
CsiI ACCWGGT 1 cut(s) 673
Csp6I GTAC 2 cut(s) 215, 783
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 7 cut(s) 128, 146, 408, 602, 714, 752, 1229
CviQI GTAC 2 cut(s) 215, 783
DdeI CTNAG 9 cut(s) 227, 271, 527, 660, 729, 1070, 1137, 1164, 1233
DinI GGCGCC 1 cut(s) 167
DpnI GATC 6 cut(s) 189, 950, 1018, 1030, 1088, 1111
DpnII GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
DriI GACNNNNNGTC 1 cut(s) 197
Eam1105I GACNNNNNGTC 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 1069
Eco105I TACGTA 1 cut(s) 1120
Eco130I CCWWGG 2 cut(s) 835, 1094
Eco24I GRGCYC 1 cut(s) 1071
Eco47I GGWCC 2 cut(s) 500, 693
Eco53kI GAGCTC 1 cut(s) 1069
EcoICRI GAGCTC 1 cut(s) 1069
EcoRI GAATTC 2 cut(s) 397, 1218
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 835, 1094
EcoT38I GRGCYC 1 cut(s) 1071
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
ErhI CCWWGG 2 cut(s) 835, 1094
Esp3I CGTCTC 1 cut(s) 958
FaeI CATG 7 cut(s) 131, 149, 411, 605, 717, 755, 1232
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FatI CATG 7 cut(s) 127, 145, 407, 601, 713, 751, 1228
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 459
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 6 cut(s) 257, 455, 810, 929, 991, 1077
FokI GGATG 2 cut(s) 630, 827
FriOI GRGCYC 1 cut(s) 1071
Fsp4HI GCNGC 6 cut(s) 257, 455, 810, 929, 991, 1077
FspBI CTAG 5 cut(s) 197, 375, 426, 986, 1208
GlaI GCGC 2 cut(s) 167, 994
GluI GCNGC 6 cut(s) 257, 455, 810, 929, 991, 1077
GsuI CTGGAG 1 cut(s) 794
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 19, 223
HapII CCGG 6 cut(s) 16, 25, 172, 220, 896, 905
HgaI GACGC 1 cut(s) 50
HhaI GCGC 2 cut(s) 168, 995
Hin1I GRCGYC 2 cut(s) 166, 1037
Hin1II CATG 7 cut(s) 131, 149, 411, 605, 717, 755, 1232
Hin6I GCGC 2 cut(s) 166, 993
HinP1I GCGC 2 cut(s) 166, 993
HincII GTYRAC 3 cut(s) 13, 33, 65
HindII GTYRAC 3 cut(s) 13, 33, 65
HinfI GANTC 4 cut(s) 66, 483, 731, 858
HpaII CCGG 6 cut(s) 16, 25, 172, 220, 896, 905
HphI GGTGA 3 cut(s) 164, 275, 296
Hpy166II GTNNAC 7 cut(s) 13, 33, 65, 94, 155, 241, 1155
Hpy188I TCNGA 7 cut(s) 739, 863, 1028, 1035, 1073, 1140, 1165
Hpy188III TCNNGA 5 cut(s) 433, 476, 647, 773, 941
Hpy8I GTNNAC 7 cut(s) 13, 33, 65, 94, 155, 241, 1155
Hpy99I CGWCG 2 cut(s) 66, 1039
HpyAV CCTTC 2 cut(s) 308, 502
HpyCH4III ACNGT 5 cut(s) 308, 832, 878, 920, 1152
HpyCH4IV ACGT 2 cut(s) 1037, 1119
HpyCH4V TGCA 8 cut(s) 140, 463, 539, 545, 668, 681, 713, 827
HpyF10VI GCNNNNNNNGC 8 cut(s) 172, 253, 460, 806, 815, 824, 905, 1066
HpyF3I CTNAG 9 cut(s) 227, 271, 527, 660, 729, 1070, 1137, 1164, 1233
HpySE526I ACGT 2 cut(s) 1037, 1119
Hsp92I GRCGYC 2 cut(s) 166, 1037
Hsp92II CATG 7 cut(s) 131, 149, 411, 605, 717, 755, 1232
HspAI GCGC 2 cut(s) 166, 993
KasI GGCGCC 1 cut(s) 165
Kzo9I GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
LmnI GCTCC 1 cut(s) 1066
Lsp1109I GCAGC 3 cut(s) 466, 821, 1088
LweI GCATC 6 cut(s) 108, 127, 268, 532, 787, 849
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 5 cut(s) 197, 375, 426, 986, 1208
MaeII ACGT 2 cut(s) 1037, 1119
MaeIII GTNAC 1 cut(s) 302
MalI GATC 6 cut(s) 189, 950, 1018, 1030, 1088, 1111
MbiI CCGCTC 1 cut(s) 270
MboI GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
MboII GAAGA 3 cut(s) 425, 726, 881
MhlI GDGCHC 1 cut(s) 1071
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 2 cut(s) 60, 740
MmeI TCCRAC 1 cut(s) 1058
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 3 cut(s) 345, 492, 761
MslI CAYNNNNRTG 3 cut(s) 150, 708, 1227
MspI CCGG 6 cut(s) 16, 25, 172, 220, 896, 905
MspR9I CCNGG 4 cut(s) 26, 220, 675, 896
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 8 cut(s) 172, 253, 460, 806, 815, 824, 905, 1066
NarI GGCGCC 1 cut(s) 166
NciI CCSGG 3 cut(s) 26, 220, 896
NdeI CATATG 1 cut(s) 459
NdeII GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
NlaIII CATG 7 cut(s) 131, 149, 411, 605, 717, 755, 1232
NlaIV GGNNCC 3 cut(s) 20, 167, 224
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 3 cut(s) 411, 717, 1232
NspV TTCGAA 1 cut(s) 1009
PaeI GCATGC 1 cut(s) 1232
PciI ACATGT 1 cut(s) 407
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 957
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 483, 858
PkrI GCNGC 6 cut(s) 258, 456, 811, 930, 992, 1078
Ple19I CGATCG 1 cut(s) 1019
PleI GAGTC 2 cut(s) 60, 739
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 2 cut(s) 60, 739
Ppu21I YACGTR 1 cut(s) 1120
PscI ACATGT 1 cut(s) 407
PsiI TTATAA 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 1071
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 3 cut(s) 20, 167, 224
PspPI GGNCC 4 cut(s) 18, 222, 500, 693
PvuI CGATCG 1 cut(s) 1019
RsaI GTAC 2 cut(s) 216, 784
RsaNI GTAC 2 cut(s) 215, 783
RseI CAYNNNNRTG 3 cut(s) 150, 708, 1227
SacI GAGCTC 1 cut(s) 1071
SalI GTCGAC 1 cut(s) 63
SaqAI TTAA 3 cut(s) 345, 492, 761
SatI GCNGC 6 cut(s) 257, 455, 810, 929, 991, 1077
Sau3AI GATC 6 cut(s) 187, 948, 1016, 1028, 1086, 1109
Sau96I GGNCC 4 cut(s) 18, 222, 500, 693
SchI GAGTC 2 cut(s) 60, 740
ScrFI CCNGG 4 cut(s) 26, 220, 675, 896
SduI GDGCHC 1 cut(s) 1071
SexAI ACCWGGT 1 cut(s) 673
SfaNI GCATC 6 cut(s) 108, 127, 268, 532, 787, 849
SfoI GGCGCC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 1009
SinI GGWCC 2 cut(s) 500, 693
SmiMI CAYNNNNRTG 3 cut(s) 150, 708, 1227
SmlI CTYRAG 2 cut(s) 449, 476
SmoI CTYRAG 2 cut(s) 449, 476
SnaBI TACGTA 1 cut(s) 1120
SphI GCATGC 1 cut(s) 1232
SsiI CCGC 6 cut(s) 22, 256, 268, 289, 928, 990
SspDI GGCGCC 1 cut(s) 165
SspMI CTAG 5 cut(s) 197, 375, 426, 986, 1208
SstI GAGCTC 1 cut(s) 1071
StyD4I CCNGG 4 cut(s) 24, 218, 673, 894
StyI CCWWGG 2 cut(s) 835, 1094
TaaI ACNGT 5 cut(s) 308, 832, 878, 920, 1152
TaiI ACGT 2 cut(s) 1040, 1122
TaqI TCGA 7 cut(s) 64, 69, 190, 1009, 1089, 1112, 1203
TaqII GACCGA 1 cut(s) 50
TauI GCSGC 3 cut(s) 259, 931, 993
TfiI GAWTC 2 cut(s) 483, 858
Tru1I TTAA 3 cut(s) 345, 492, 761
Tru9I TTAA 3 cut(s) 345, 492, 761
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 3 cut(s) 454, 809, 1076
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 4 cut(s) 144, 594, 632, 803
TspGWI ACGGA 1 cut(s) 949
TspRI CASTG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 500, 693
XapI RAATTY 4 cut(s) 347, 397, 687, 1218
XceI RCATGY 3 cut(s) 411, 717, 1232
XcmI CCANNNNNNNNNTGG 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 5 cut(s) 197, 375, 426, 986, 1208
ZraI GACGTC 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.