Cleavage and polyadenylation specificity factor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0293481 |
| rosa_multiflora | Rmu_sc0001301.1_g000075 |
| rosa_roxburghii | Rroxscaffold_1G00000300 |
| rosa_samantha | Rh6CG362600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 235 |
| AciI | CCGC | 1 cut(s) | 288 |
| AcsI | RAATTY | 2 cut(s) | 12, 150 |
| AfaI | GTAC | 1 cut(s) | 247 |
| AluBI | AGCT | 1 cut(s) | 284 |
| AluI | AGCT | 1 cut(s) | 284 |
| Aor13HI | TCCGGA | 1 cut(s) | 235 |
| ApeKI | GCWGC | 2 cut(s) | 272, 281 |
| ApoI | RAATTY | 2 cut(s) | 12, 150 |
| AspS9I | GGNCC | 1 cut(s) | 156 |
| AvaII | GGWCC | 1 cut(s) | 156 |
| BbsI | GAAGAC | 1 cut(s) | 189 |
| BbvI | GCAGC | 2 cut(s) | 284, 293 |
| BisI | GCNGC | 2 cut(s) | 273, 282 |
| BlsI | GCNGC | 2 cut(s) | 274, 283 |
| Bme18I | GGWCC | 1 cut(s) | 156 |
| BmgT120I | GGNCC | 1 cut(s) | 156 |
| BmrI | ACTGGG | 1 cut(s) | 58 |
| BmuI | ACTGGG | 1 cut(s) | 58 |
| BpiI | GAAGAC | 1 cut(s) | 189 |
| BsaWI | WCCGGW | 2 cut(s) | 19, 235 |
| Bse1I | ACTGG | 1 cut(s) | 53 |
| BseAI | TCCGGA | 1 cut(s) | 235 |
| BseGI | GGATG | 2 cut(s) | 105, 303 |
| BseMII | CTCAG | 1 cut(s) | 183 |
| BseNI | ACTGG | 1 cut(s) | 53 |
| BseXI | GCAGC | 2 cut(s) | 284, 293 |
| BseYI | CCCAGC | 1 cut(s) | 268 |
| BsiSI | CCGG | 2 cut(s) | 20, 236 |
| BsmI | GAATGC | 1 cut(s) | 178 |
| Bsp13I | TCCGGA | 1 cut(s) | 235 |
| BspACI | CCGC | 1 cut(s) | 288 |
| BspCNI | CTCAG | 1 cut(s) | 184 |
| BspEI | TCCGGA | 1 cut(s) | 235 |
| BsrI | ACTGG | 1 cut(s) | 53 |
| Bst4CI | ACNGT | 2 cut(s) | 160, 295 |
| BstDEI | CTNAG | 2 cut(s) | 192, 330 |
| BstF5I | GGATG | 2 cut(s) | 105, 303 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 278, 281, 287 |
| BstNSI | RCATGY | 1 cut(s) | 180 |
| BstV1I | GCAGC | 2 cut(s) | 284, 293 |
| BstV2I | GAAGAC | 1 cut(s) | 189 |
| BtsCI | GGATG | 2 cut(s) | 105, 303 |
| Cfr13I | GGNCC | 1 cut(s) | 156 |
| Csp6I | GTAC | 1 cut(s) | 246 |
| CviAII | CATG | 4 cut(s) | 67, 177, 215, 339 |
| CviJI | RGCY | 2 cut(s) | 242, 284 |
| CviKI_1 | RGCY | 2 cut(s) | 242, 284 |
| CviQI | GTAC | 1 cut(s) | 246 |
| DdeI | CTNAG | 2 cut(s) | 192, 330 |
| Eco47I | GGWCC | 1 cut(s) | 156 |
| EcoT22I | ATGCAT | 1 cut(s) | 178 |
| FaeI | CATG | 4 cut(s) | 70, 180, 218, 342 |
| FaiI | YATR | 8 cut(s) | 44, 68, 168, 178, 186, 216, 258, 340 |
| FatI | CATG | 4 cut(s) | 66, 176, 214, 338 |
| Fnu4HI | GCNGC | 2 cut(s) | 273, 282 |
| FokI | GGATG | 2 cut(s) | 92, 290 |
| Fsp4HI | GCNGC | 2 cut(s) | 273, 282 |
| GluI | GCNGC | 2 cut(s) | 273, 282 |
| GsaI | CCCAGC | 1 cut(s) | 272 |
| HapII | CCGG | 2 cut(s) | 20, 236 |
| Hin1II | CATG | 4 cut(s) | 70, 180, 218, 342 |
| HincII | GTYRAC | 1 cut(s) | 265 |
| HindII | GTYRAC | 1 cut(s) | 265 |
| HinfI | GANTC | 3 cut(s) | 194, 321, 334 |
| HpaII | CCGG | 2 cut(s) | 20, 236 |
| Hpy166II | GTNNAC | 2 cut(s) | 163, 265 |
| Hpy188I | TCNGA | 1 cut(s) | 202 |
| Hpy188III | TCNNGA | 2 cut(s) | 236, 299 |
| Hpy8I | GTNNAC | 2 cut(s) | 163, 265 |
| Hpy99I | CGWCG | 1 cut(s) | 99 |
| HpyCH4III | ACNGT | 2 cut(s) | 160, 295 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 10, 130, 144, 176 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 278, 281, 287 |
| HpyF3I | CTNAG | 2 cut(s) | 192, 330 |
| Hsp92II | CATG | 4 cut(s) | 70, 180, 218, 342 |
| Kpn2I | TCCGGA | 1 cut(s) | 235 |
| LpnPI | CCDG | 5 cut(s) | 33, 34, 249, 282, 310 |
| Lsp1109I | GCAGC | 2 cut(s) | 284, 293 |
| MboII | GAAGA | 2 cut(s) | 83, 189 |
| MluCI | AATT | 6 cut(s) | 12, 23, 39, 101, 150, 225 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MnlI | CCTC | 1 cut(s) | 232 |
| Mph1103I | ATGCAT | 1 cut(s) | 178 |
| MroI | TCCGGA | 1 cut(s) | 235 |
| MseI | TTAA | 2 cut(s) | 119, 224 |
| MslI | CAYNNNNRTG | 1 cut(s) | 171 |
| MspI | CCGG | 2 cut(s) | 20, 236 |
| Mva1269I | GAATGC | 1 cut(s) | 178 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 278, 281, 287 |
| NlaIII | CATG | 4 cut(s) | 70, 180, 218, 342 |
| NsiI | ATGCAT | 1 cut(s) | 178 |
| NspI | RCATGY | 1 cut(s) | 180 |
| PctI | GAATGC | 1 cut(s) | 178 |
| PfeI | GAWTC | 2 cut(s) | 321, 334 |
| PkrI | GCNGC | 2 cut(s) | 274, 283 |
| PleI | GAGTC | 1 cut(s) | 202 |
| PpsI | GAGTC | 1 cut(s) | 202 |
| PspFI | CCCAGC | 1 cut(s) | 268 |
| PspPI | GGNCC | 1 cut(s) | 156 |
| RsaI | GTAC | 1 cut(s) | 247 |
| RsaNI | GTAC | 1 cut(s) | 246 |
| RseI | CAYNNNNRTG | 1 cut(s) | 171 |
| SaqAI | TTAA | 2 cut(s) | 119, 224 |
| SatI | GCNGC | 2 cut(s) | 273, 282 |
| Sau96I | GGNCC | 1 cut(s) | 156 |
| SchI | GAGTC | 1 cut(s) | 203 |
| SetI | ASST | 2 cut(s) | 286, 329 |
| SinI | GGWCC | 1 cut(s) | 156 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 171 |
| Sse9I | AATT | 6 cut(s) | 12, 23, 39, 101, 150, 225 |
| SsiI | CCGC | 1 cut(s) | 288 |
| SspI | AATATT | 1 cut(s) | 116 |
| TaaI | ACNGT | 2 cut(s) | 160, 295 |
| TaqI | TCGA | 1 cut(s) | 319 |
| TasI | AATT | 6 cut(s) | 12, 23, 39, 101, 150, 225 |
| TfiI | GAWTC | 2 cut(s) | 321, 334 |
| Tru1I | TTAA | 2 cut(s) | 119, 224 |
| Tru9I | TTAA | 2 cut(s) | 119, 224 |
| TseI | GCWGC | 2 cut(s) | 272, 281 |
| TspDTI | ATGAA | 3 cut(s) | 59, 94, 266 |
| TspGWI | ACGGA | 1 cut(s) | 98 |
| VpaK11BI | GGWCC | 1 cut(s) | 156 |
| XapI | RAATTY | 2 cut(s) | 12, 150 |
| XceI | RCATGY | 1 cut(s) | 180 |
| Zsp2I | ATGCAT | 1 cut(s) | 178 |