RchiOBHm_Chr6g0296081

Delta-aminolevulinic acid dehydratase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
57847647 .. 57850844
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26575

Sequence Viewer

Length: 1269 bp
ATGGCTTCGACTTTCGTCAATGTGGGACCAATCAAGGGTCTGGATTACGTTGGTTTCCGGCCCTCCAGACCTCTCAAACTCAATTCGGGTCGGACCCAGTTCGACCCAAGACCGCTCCGCCGCCTGACTGTTAGAGCCGGCGACGGCGACGGCCCGGTTGGGAAGACCCGATTGAGCGACGCCGACTGTGAGGCCGCTGTCGTCGCCGGAAACGTGCCGCAAGCACCTCCGGCGCCGCCCAAGCCCGCCGCGCCAGCTGGCACTCCGGTGGTGCCTTTGCTTCCTCTAAGTCGCCGGCCTCGGCGTAACCGGAGGTCACCGGCGCTCAGGGCGGCGTTTCAGGAAACAAGCTTGTCCCCTGCGAATTTTGTGTACCCACTTTTCATTCATGAAGGTCAGGAAGACACACCTATTGGGGCAATGCCGGGTTGTTATAGGCTTGGGTGGAGACATGGGCTTGTGGAAGAGGTTGCAAAGGCTCGAGATGTTGGTGTTAATAGTATTGTGCTCTTCCCCAAAATCCCGGATGCTTTGAAGAATGCAACAGGTGATGAAGCCTACAATGATGATGGTTTAGTACCTCGATCAATTCGGTTGCTCAAGGACAAATTCCCTGATCTTGTTATCTACACTGATGTTGCTCTAGATCCATATTCCTCGGATGGGCATGATGGTATTGTTAGAGAAGACGGAGTTATAATGAATGACGAGACTGTGCATCAATTGTGTAAACAAGCTGTTTCTCAGGCCCGAGCTGGAGCAGACGTGGTTAGTCCGAGTGATATGATGGATGGTCGTGTAGGAGCTATTCGAAATGCTCTTGATGCTGAAGGTTTTCTTCATGTTTCTATCATGTCCTATACAGCTAAGTATGCAAGTTCATTCTATGGTCCATTTCGGGAAGCTCTGGACTCAAATCCACGTTTTGGTGACAAGAAAACTTATCAGATGAACCCGGCAAATTATAGAGAGGCTCTAGTCGAGGCAGGTGAAGATGAGTCTGAAGGAGCTGATATCCTCCTGGTGAAACCTGGTCTGCCATATCTGGATATCATAAGATTACTCCGGGATAGCTCTTCTTTGCCAATCGCCGCATATCAGGTTTCGGGTGAGTATTCAATGATCAAGGCTGGTGGTGCTCTCCAAATGATTGATGAAGAAAAGGTTATGCTTGAATCGCTGATGTGTCTACGAAGGGCTGGTGCTGACATAATCCTCACATACTTTGCCATGCAAGCTGCCAGAAGTTTATGTGGTGAGAAGAGGTGA

Protein Analysis

422

Amino Acids

45.85

Weight (kDa)

6.05

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALAD PF00490 98 - 415 4e-133 Delta-aminolevulinic acid dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010985)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
AarI CACCTGC 1 cut(s) 977
Acc36I ACCTGC 1 cut(s) 977
AccB1I GGYRCC 2 cut(s) 232, 271
AccB7I CCANNNNNTGG 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 1189
AccII CGCG 1 cut(s) 251
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 2 cut(s) 364, 608
AcuI CTGAAG 2 cut(s) 849, 1023
AcyI GRCGYC 2 cut(s) 180, 233
AfaI GTAC 2 cut(s) 374, 579
AfiI CCNNNNNNNGG 3 cut(s) 35, 663, 926
AgsI TTSAA 3 cut(s) 535, 1119, 1175
AjiI CACGTC 1 cut(s) 766
AjnI CCWGG 2 cut(s) 1020, 1030
AleI CACNNNNGTG 1 cut(s) 266
Alw21I GWGCWC 2 cut(s) 510, 1141
Alw26I GTCTC 2 cut(s) 442, 704
AlwI GGATC 1 cut(s) 641
Ama87I CYCGRG 2 cut(s) 480, 750
AoxI GGCC 5 cut(s) 59, 151, 192, 296, 747
ApeKI GCWGC 1 cut(s) 1238
ApoI RAATTY 2 cut(s) 364, 608
Asp700I GAANNNNTTC 1 cut(s) 834
AspLEI GCGC 3 cut(s) 235, 253, 325
AspS9I GGNCC 6 cut(s) 26, 60, 93, 152, 748, 890
AsuC2I CCSGG 5 cut(s) 155, 426, 524, 956, 1067
AsuHPI GGTGA 7 cut(s) 309, 560, 941, 1001, 1036, 1121, 1268
AsuII TTCGAA 1 cut(s) 811
AvaI CYCGRG 2 cut(s) 480, 750
AvaII GGWCC 3 cut(s) 26, 93, 890
BanI GGYRCC 2 cut(s) 232, 271
BbsI GAAGAC 3 cut(s) 170, 408, 693
Bbv12I GWGCWC 2 cut(s) 510, 1141
BbvI GCAGC 1 cut(s) 1225
BccI CCATC 5 cut(s) 563, 656, 665, 781, 785
BceAI ACGGC 2 cut(s) 160, 166
BciT130I CCWGG 2 cut(s) 1022, 1032
BclI TGATCA 1 cut(s) 1122
BcnI CCSGG 5 cut(s) 155, 426, 524, 956, 1067
BcoDI GTCTC 2 cut(s) 442, 704
BfaI CTAG 2 cut(s) 644, 977
BfoI RGCGCY 2 cut(s) 236, 326
BfuAI ACCTGC 1 cut(s) 977
BisI GCNGC 8 cut(s) 121, 195, 218, 236, 249, 333, 1092, 1239
BlsI GCNGC 8 cut(s) 122, 196, 219, 237, 250, 334, 1093, 1240
Bme1390I CCNGG 7 cut(s) 155, 426, 524, 956, 1022, 1032, 1067
Bme18I GGWCC 3 cut(s) 26, 93, 890
BmeT110I CYCGRG 2 cut(s) 480, 750
BmgBI CACGTC 1 cut(s) 766
BmgT120I GGNCC 6 cut(s) 26, 60, 93, 152, 748, 890
BmiI GGNNCC 4 cut(s) 27, 95, 234, 273
BmrFI CCNGG 7 cut(s) 155, 426, 524, 956, 1022, 1032, 1067
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 3 cut(s) 517, 727, 814
BmuI ACTGGG 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 3 cut(s) 170, 408, 693
BpmI CTGGAG 2 cut(s) 49, 777
Bpu10I CCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 811
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 5 cut(s) 155, 426, 524, 956, 1067
BsaHI GRCGYC 2 cut(s) 180, 233
BsaJI CCNNGG 2 cut(s) 299, 657
BsaWI WCCGGW 2 cut(s) 265, 309
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 663, 926
Bse118I RCCGGY 3 cut(s) 137, 294, 319
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 1022, 1032
BseDI CCNNGG 2 cut(s) 299, 657
BseGI GGATG 3 cut(s) 532, 667, 796
BseLI CCNNNNNNNGG 3 cut(s) 35, 663, 926
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 340, 758
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 1225
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 5 cut(s) 61, 153, 194, 298, 749
BshNI GGYRCC 2 cut(s) 232, 271
BsiHKAI GWGCWC 2 cut(s) 510, 1141
BsiHKCI CYCGRG 2 cut(s) 480, 750
BslFI GGGAC 2 cut(s) 39, 340
BslI CCNNNNNNNGG 3 cut(s) 35, 663, 926
BsmAI GTCTC 2 cut(s) 442, 704
BsmFI GGGAC 2 cut(s) 39, 340
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 5 cut(s) 61, 153, 194, 298, 749
BsoBI CYCGRG 2 cut(s) 480, 750
Bsp119I TTCGAA 1 cut(s) 811
Bsp1286I GDGCHC 2 cut(s) 510, 1141
Bsp143I GATC 4 cut(s) 584, 616, 646, 1122
BspANI GGCC 5 cut(s) 61, 153, 194, 298, 749
BspCNI CTCAG 2 cut(s) 339, 757
BspFNI CGCG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 4 cut(s) 27, 95, 234, 273
BspMI ACCTGC 1 cut(s) 977
BspPI GGATC 1 cut(s) 641
BspQI GCTCTTC 2 cut(s) 515, 1081
BspT104I TTCGAA 1 cut(s) 811
BspT107I GGYRCC 2 cut(s) 232, 271
BsrBI CCGCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 3 cut(s) 137, 294, 319
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 3 cut(s) 137, 294, 319
BssECI CCNNGG 2 cut(s) 299, 657
BssMI GATC 4 cut(s) 584, 616, 646, 1122
BssNI GRCGYC 2 cut(s) 180, 233
Bst2UI CCWGG 2 cut(s) 1022, 1032
Bst4CI ACNGT 3 cut(s) 130, 188, 715
Bst6I CTCTTC 4 cut(s) 459, 515, 1081, 1256
BstACI GRCGYC 2 cut(s) 180, 233
BstBI TTCGAA 1 cut(s) 811
BstC8I GCNNGC 7 cut(s) 139, 222, 246, 255, 259, 296, 1236
BstDEI CTNAG 4 cut(s) 287, 326, 744, 867
BstEII GGTNACC 1 cut(s) 315
BstF5I GGATG 3 cut(s) 532, 667, 796
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 2 cut(s) 236, 326
BstHHI GCGC 3 cut(s) 235, 253, 325
BstKTI GATC 4 cut(s) 587, 619, 649, 1125
BstMAI GTCTC 2 cut(s) 442, 704
BstMBI GATC 4 cut(s) 584, 616, 646, 1122
BstNI CCWGG 2 cut(s) 1022, 1032
BstPAI GACNNNNGTC 1 cut(s) 14
BstPI GGTNACC 1 cut(s) 315
BstSCI CCNGG 7 cut(s) 153, 424, 522, 954, 1020, 1030, 1065
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 1225
BstV2I GAAGAC 3 cut(s) 170, 408, 693
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 5 cut(s) 61, 153, 194, 298, 749
BtrI CACGTC 1 cut(s) 766
BtsCI GGATG 3 cut(s) 532, 667, 796
BtsIMutI CAGTG 1 cut(s) 630
BveI ACCTGC 1 cut(s) 977
Cac8I GCNNGC 7 cut(s) 139, 222, 246, 255, 259, 296, 1236
CciI TCATGA 1 cut(s) 388
CfoI GCGC 3 cut(s) 235, 253, 325
Cfr10I RCCGGY 3 cut(s) 137, 294, 319
Cfr13I GGNCC 6 cut(s) 26, 60, 93, 152, 748, 890
CseI GACGC 1 cut(s) 188
CsiI ACCWGGT 1 cut(s) 1030
Csp6I GTAC 2 cut(s) 373, 578
CspCI CAANNNNNGTGG 2 cut(s) 1114, 1149
CviAII CATG 6 cut(s) 389, 452, 668, 842, 853, 1231
CviQI GTAC 2 cut(s) 373, 578
DdeI CTNAG 4 cut(s) 287, 326, 744, 867
DinI GGCGCC 1 cut(s) 234
DpnI GATC 4 cut(s) 586, 618, 648, 1124
DpnII GATC 4 cut(s) 584, 616, 646, 1122
Eam1104I CTCTTC 4 cut(s) 459, 515, 1081, 1256
EarI CTCTTC 4 cut(s) 459, 515, 1081, 1256
EciI GGCGGA 1 cut(s) 107
Eco32I GATATC 2 cut(s) 1015, 1051
Eco47I GGWCC 3 cut(s) 26, 93, 890
Eco57I CTGAAG 2 cut(s) 849, 1023
Eco88I CYCGRG 2 cut(s) 480, 750
Eco91I GGTNACC 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 1020, 1030
EcoRV GATATC 2 cut(s) 1015, 1051
EgeI GGCGCC 1 cut(s) 234
EheI GGCGCC 1 cut(s) 234
FaeI CATG 6 cut(s) 392, 455, 671, 845, 856, 1234
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 2 cut(s) 39, 340
FatI CATG 6 cut(s) 388, 451, 667, 841, 852, 1230
FauI CCCGC 1 cut(s) 253
FbaI TGATCA 1 cut(s) 1122
FblI GTMKAC 1 cut(s) 1189
Fnu4HI GCNGC 8 cut(s) 121, 195, 218, 236, 249, 333, 1092, 1239
FokI GGATG 3 cut(s) 539, 674, 803
Fsp4HI GCNGC 8 cut(s) 121, 195, 218, 236, 249, 333, 1092, 1239
FspBI CTAG 2 cut(s) 644, 977
GlaI GCGC 3 cut(s) 234, 252, 324
GluI GCNGC 8 cut(s) 121, 195, 218, 236, 249, 333, 1092, 1239
GsuI CTGGAG 2 cut(s) 49, 777
HaeII RGCGCY 2 cut(s) 236, 326
HaeIII GGCC 5 cut(s) 61, 153, 194, 298, 749
HgaI GACGC 1 cut(s) 188
HhaI GCGC 3 cut(s) 235, 253, 325
Hin1I GRCGYC 2 cut(s) 180, 233
Hin1II CATG 6 cut(s) 392, 455, 671, 845, 856, 1234
Hin6I GCGC 3 cut(s) 233, 251, 323
HinP1I GCGC 3 cut(s) 233, 251, 323
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 3 cut(s) 911, 998, 1175
HphI GGTGA 7 cut(s) 309, 560, 941, 1001, 1036, 1121, 1268
Hpy166II GTNNAC 3 cut(s) 373, 731, 1190
Hpy188I TCNGA 5 cut(s) 93, 661, 777, 948, 1003
Hpy8I GTNNAC 3 cut(s) 373, 731, 1190
Hpy99I CGWCG 4 cut(s) 146, 152, 182, 206
HpyAV CCTTC 4 cut(s) 386, 824, 998, 1188
HpyCH4III ACNGT 3 cut(s) 130, 188, 715
HpyCH4IV ACGT 4 cut(s) 48, 213, 765, 922
HpyCH4V TGCA 5 cut(s) 473, 542, 718, 875, 1234
HpyF3I CTNAG 4 cut(s) 287, 326, 744, 867
HpySE526I ACGT 4 cut(s) 48, 213, 765, 922
Hsp92I GRCGYC 2 cut(s) 180, 233
Hsp92II CATG 6 cut(s) 392, 455, 671, 845, 856, 1234
HspAI GCGC 3 cut(s) 233, 251, 323
KasI GGCGCC 1 cut(s) 232
KroI GCCGGC 2 cut(s) 137, 294
KroNI GCCGGC 2 cut(s) 139, 296
Ksp22I TGATCA 1 cut(s) 1122
Kzo9I GATC 4 cut(s) 584, 616, 646, 1122
LguI GCTCTTC 2 cut(s) 515, 1081
LmnI GCTCC 4 cut(s) 120, 758, 803, 1007
Lsp1109I GCAGC 1 cut(s) 1225
LweI GCATC 3 cut(s) 517, 727, 814
MabI ACCWGGT 1 cut(s) 1030
MaeI CTAG 2 cut(s) 644, 977
MaeII ACGT 4 cut(s) 48, 213, 765, 922
MaeIII GTNAC 3 cut(s) 305, 315, 929
MalI GATC 4 cut(s) 586, 618, 648, 1124
MbiI CCGCTC 1 cut(s) 115
MboI GATC 4 cut(s) 584, 616, 646, 1122
MfeI CAATTG 1 cut(s) 722
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 510, 1141
MluCI AATT 6 cut(s) 82, 364, 588, 608, 722, 961
Mly113I GGCGCC 1 cut(s) 233
MlyI GAGTC 2 cut(s) 905, 1007
MmeI TCCRAC 1 cut(s) 71
MroNI GCCGGC 2 cut(s) 137, 294
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 197, 257
MspR9I CCNGG 7 cut(s) 155, 426, 524, 956, 1022, 1032, 1067
MunI CAATTG 1 cut(s) 722
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 2 cut(s) 1022, 1032
MvnI CGCG 1 cut(s) 251
NaeI GCCGGC 2 cut(s) 139, 296
NarI GGCGCC 1 cut(s) 233
NciI CCSGG 5 cut(s) 155, 426, 524, 956, 1067
NdeII GATC 4 cut(s) 584, 616, 646, 1122
NgoMIV GCCGGC 2 cut(s) 137, 294
NlaIII CATG 6 cut(s) 392, 455, 671, 845, 856, 1234
NlaIV GGNNCC 4 cut(s) 27, 95, 234, 273
NmeAIII GCCGAG 1 cut(s) 280
NmuCI GTSAC 2 cut(s) 315, 929
NspV TTCGAA 1 cut(s) 811
OliI CACNNNNGTG 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 480
PagI TCATGA 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 977
PciSI GCTCTTC 2 cut(s) 515, 1081
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 544
PdiI GCCGGC 2 cut(s) 139, 296
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 1 cut(s) 1175
PflMI CCANNNNNTGG 1 cut(s) 926
PfoI TCCNGGA 2 cut(s) 522, 1065
PkrI GCNGC 8 cut(s) 122, 196, 219, 237, 250, 334, 1093, 1240
PleI GAGTC 2 cut(s) 905, 1006
PluTI GGCGCC 1 cut(s) 236
PpsI GAGTC 2 cut(s) 905, 1006
PshAI GACNNNNGTC 1 cut(s) 14
PsiI TTATAA 1 cut(s) 698
Psp6I CCWGG 2 cut(s) 1020, 1030
PspEI GGTNACC 1 cut(s) 315
PspGI CCWGG 2 cut(s) 1020, 1030
PspN4I GGNNCC 4 cut(s) 27, 95, 234, 273
PspPI GGNCC 6 cut(s) 26, 60, 93, 152, 748, 890
PsuI RGATCY 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 2 cut(s) 374, 579
RsaNI GTAC 2 cut(s) 373, 578
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 2 cut(s) 515, 1081
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 8 cut(s) 121, 195, 218, 236, 249, 333, 1092, 1239
Sau3AI GATC 4 cut(s) 584, 616, 646, 1122
Sau96I GGNCC 6 cut(s) 26, 60, 93, 152, 748, 890
SchI GAGTC 2 cut(s) 905, 1007
ScrFI CCNGG 7 cut(s) 155, 426, 524, 956, 1022, 1032, 1067
SduI GDGCHC 2 cut(s) 510, 1141
SexAI ACCWGGT 1 cut(s) 1030
SfaNI GCATC 3 cut(s) 517, 727, 814
SfoI GGCGCC 1 cut(s) 234
Sfr274I CTCGAG 1 cut(s) 480
SfuI TTCGAA 1 cut(s) 811
SgrAI CRCCGGYG 1 cut(s) 319
SinI GGWCC 3 cut(s) 26, 93, 890
SlaI CTCGAG 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 480, 599
SmoI CTYRAG 2 cut(s) 480, 599
Sse9I AATT 6 cut(s) 82, 364, 588, 608, 722, 961
SspDI GGCGCC 1 cut(s) 232
SspMI CTAG 2 cut(s) 644, 977
StyD4I CCNGG 7 cut(s) 153, 424, 522, 954, 1020, 1030, 1065
TaaI ACNGT 3 cut(s) 130, 188, 715
TaiI ACGT 4 cut(s) 51, 216, 768, 925
TaqI TCGA 6 cut(s) 8, 102, 481, 583, 811, 981
TasI AATT 6 cut(s) 82, 364, 588, 608, 722, 961
TauI GCSGC 7 cut(s) 123, 197, 220, 238, 251, 335, 1094
TfiI GAWTC 1 cut(s) 1175
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 2 cut(s) 315, 929
TseI GCWGC 1 cut(s) 1238
Tsp45I GTSAC 2 cut(s) 315, 929
TspDTI ATGAA 9 cut(s) 373, 377, 405, 567, 716, 830, 870, 965, 1170
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 1 cut(s) 637
Van91I CCANNNNNTGG 1 cut(s) 926
VpaK11BI GGWCC 3 cut(s) 26, 93, 890
XapI RAATTY 2 cut(s) 364, 608
XbaI TCTAGA 1 cut(s) 643
XhoI CTCGAG 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 1189
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 2 cut(s) 644, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.