Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010985

Physical Location & Seq

Genomic Coordinates Forward (+)

40389013 .. 40393512

Gene Structure 4500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0257100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3336 bp

ATGCCCTCCTCCTCCTTCTTCTTCCTCTTGCTCTTTCTGTTCTGCGCACTACCCTTTGTAGCCCCTAGCCGGCGGATCCTCCACCAGCCGTTGTTACCCCAAGATTCTCTTCCTCCTGCTTCGCCTCCGGCTCCGTCTCCGCCTTCTCTGCCTCCCAACCCGAATCCCAAGTACCCATTTTCAACTTCCAATTCTACCCCTTCAGATTCTCCCTTTTTCCCAACCTACCCCGCCCCGCCTCCTCCTCCCTCTTCCCCGGCCACATTCGCCTCCTTCCCGGCCAACATCTCCTCCCTCATTCTCCCCCAGGCACCTGCCTCCAACTCCAAATCCCACAAGCTCGTTGCCCTCGCCGTATGCGCCTCCATCTCCGCCGCCGTCGCCGTCGCCTCCGCCGTCTTCGTCCTCTGCCGTCGCAGGCGCAACAACAACCGCAACTTCCCCGATGAGGACGACAAGACCTACAGATCCGAGCAGAGCAACCGCTTCTTTCAGGCCAGCAATGCCGGCTCCAGCAGCGGGGCCCACAAGCTCCGGACCGGCTCCTCCACCAGCTCCGAGTTCCTCTACCTCGGCACTGTCGTCAACTCCCGCGGAATCGACGAGCGCGTGAGCTCACGCGGCGGCGCGTTGGAGAATCGGAAGGTCGACTCGCCGGACCTCCAGCCGCTCCCGCCGCTGTCCCGCCAGTGCTCCAAGCTCAGTAACTGCACCAATGCCGAACCGGCTCGGACCGGAGACGAGGAAGAGGAGGAGGAAGAAGAGTTTTACTCGCCGAGAGGATCTTCCGGTGACCGTGAAAGCTTCAATGGAGTTGGATCGGGGTCTCGGAGACTATTCGGCGCAGTGGTGGCCGGTGATCTCGAGGAAAGAAACAGCGAAACGACGTCGTGCTCCTGCTCGTCTTCAAATTCCGGTTCACCGGCCCGGTCACACTCTATCAGTCTATCTCCGGCGGTCAGTGTAAGTCCGAGAAGACCATCACTACCCAAATCTCCCGAGTCTTCTGTTATGGAGCCTCTGCCTTCACAGCCACAGCCAGCTGAGCCTCATTATCCGACGCCGTTTGGTTTCGAAACGGTGTCTCGTTCCCCATCTTCGTCGCCGCCGGTGAGACTACTGGAGAATATTCCGGAATCCTCGCCGAGAAGGTCGAGCTTTTCGCAGCAGAATCTGCGGTCGCCTTCGCTGAGTCCAATGTCTTCGCCGGAGAGAGCTGTAGAGGAATACCCATCCGCATCTTCGGATCGAAACCCGGCCGGGTCTCCTTCAATGTCTTCACTTACTTCGTCGCCGGTGAGAGATTTGGAGAAGGAGGCAGATGCGTCTCCAAAAGTTTCGGTCTTTTCGAATCAAAGTTCTCCAATTTCTTTACCACCAAAAGCTTCAGCGTTTTCACTATCTTCAAGTTGCTCGTCTTCACCGGATAGAGTATCAAATGCTTCTGATGAAAAGGCCAAGTCTCCTTCAGATGGGTCTATGTCACCGGAGAGAGATTTGGAGAAGAGCCCAGTTGCATCGCCAAGAACTTCAAATGCTTCTGATCGATCATTTATTCATTTGGATCCGAAGAGGCAGTCTTTTTCGTCGGCTTCTTCAGTGTCTTCTTCACCGGAGAGAGAGTTGGGGAACAATTCAGACGCATCACGGAAAGTCTCCAATGTTTCTAATCGTATTGAAGAATCTTCATCTGGACTGAATGGGGCTTTGAAGATGCCTCTTTCGATACCGCCACCTCCTCCGCCACCACTGCCTCCTTCACTAAGACTGTGGGAGACTCCAAGTCCTAAAACACCAGCTGGCCAACCAATCTCTAGACCTCCAGCTCTTATACCTCCTTCAAGGCCTTTCGTGTTTCAAAACCCAGGGAAGGTCTCTGTTTCACCAGTGCAGCTGCCACCGAGTTCTGCACCATTGGAGCCTATTGAGGAGACTCCGAAACCCAAGTTAAAGCCATTGCATTGGGATAAAGTTAGAGCTAGCTCTGACCGTGAAATGGTGTGGGATCAGCTAAGATCAAGCTCTTTCAAATTGAATGAAGAAATGATAGAGACATTGTTCGTTGTAAATACACCCAAACCGAATCCAAAGGAAACAACCCCACGCTCAGTTATTCCCTCACCTAAGCAAGAGAACAGAGTACTCGATCCTAAAAAGTCCCAGAATATTGCAATCTTGCTTAGGGCACTCAATGTGACCATAGAAGAAGTTTGTGAAGCGCTCATAGAAGGTAATGCAGATGCTCTAGGAACTGAATTACTTGAAAGTCTATTGAAGATGGCTCCAACCAAAGAAGAAGAGCGTATGCTGAAGGAGTACAAAGATGATTCACCAGTTAAGCTTGGCCCTGCCGAGAAATTTCTGAAAGAACTGCTTGATGTTCCTTTTGCATTTAAAAGGGTTGAGGCAATGCTTTACATGACTAATTTTGAATCTGAAATCGAATACCTGAAAAAGTCTTTCGAAACTCTAGAGGTTGCCTGTGAAGAATTGAGAAATAGTAGGATGTTCTTGAAGCTTTTAGAGGCTGTGCTCAAGACTGGAAACAGAATGAATGTTGGGACAAACCGCGGTGATGCCCATGCCTTCAAACTTGACACACTCCTCAAGCTTGCTGACGTTAAGGGAGCAGATGGGAAAACCACGCTTTTGCATTTTGTTGTACAAGAAATCATAAGAACTGAAGGTGCTCGTCTCATTGGTGGTCAAACTTCATCAAACACAGCTTTGAATGATGATGCCAAGTGTAGGAGACTTGGCCTGCCAGTTGTTTCAGGTCTCAGTTCAGACCTCACTAATGTCAAGAAAGCTGCTGCCATGGACTCTGATGTGCTTAGCGGTGAAGTTTTTAAGCTTTCTAGAGGTATTAGTAACATTGGGGAGGTTGTGCAATTAGCTGAGACAAAGGTGTCAGGTGGAAGCAGCGGGAAATTTGCAGAGTCCATGACCATGTTCATGAAAATGGCCGAGGAGGAGATTATAAGACTTCAAGCTCAAGAAAGTGTTGCTTTGTCCTTGGTGAAGGAGATCACAGAGTACTTCCATGGGAATTCCGCTAGGGAAGAAGCTCACCCATTTCGAATCTTCATGGTAGTGAGAGACTTTCTAACAGTTCTTGATCGGGTATGTAAGGAAGTTGGTTTGATAAACGAGCGAACCATTGTTAGTAATGCCCAAAAGTTCCCAGTTCCAGTAAATCCCATGCTACAGCAACAAGTATTTCCAGTAAACCCAATGCTACCGCAAGTTCATCCTGTAAACCCAATGCTACCGCAAGTTCTCCCTGGAATCCATGGCAGGCGACCCTACGATTCATCCGATGATGAGAGTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004655 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046872 GO:0046914 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

ALAD

Protein Analysis

1111

Amino Acids

120.58

Weight (kDa)

6.45

Isoelectric Point (pI)

78.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FH2	PF02181	644 - 1039	3.3e-122	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69740 AT1G69740 AT1G69740
fragaria_vesca	FvH4_2g27170 FvH4_2g27170 FvH4_2g27170
malus_domestica	MD08G1161600.v1.1 MD15G1346700.v1.1
prunus_persica	Prupe.1G494300_v2.0.a1 Prupe.1G494300_v2.0.a1
pyrus_communis	pycom08g13890 pycom15g31050
rosa_chinensis	RchiOBHm_Chr6g0296081
rosa_laevigata	RLG00000011735
rosa_multiflora	Rmu_sc0003139.1_g000032
rosa_roxburghii	Rroxscaffold_7G00171840
rosa_rugosa	Rorug06G0257100 Rorug06G0257200
rosa_samantha	Rh6AG370400
rosa_wichuraiana	Rw6G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2981
AarI	CACCTGC	1 cut(s)	322
AasI	GACNNNNNNGTC	1 cut(s)	2908
AatII	GACGTC	1 cut(s)	890
Acc16I	TGCGCA	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	648
AccII	CGCG	5 cut(s)	594, 609, 621, 629, 2571
AccIII	TCCGGA	2 cut(s)	534, 1132
AcoI	YGGCCR	6 cut(s)	258, 279, 852, 1257, 1801, 2964
AcsI	RAATTY	4 cut(s)	910, 2357, 2930, 3049
AcuI	CTGAAG	6 cut(s)	186, 1371, 1452, 1581, 2330, 2703
AcyI	GRCGYC	2 cut(s)	887, 1061
AfaI	GTAC	6 cut(s)	173, 2142, 2318, 2664, 3038, 3331
AfeI	AGCGCT	1 cut(s)	2220
AfiI	CCNNNNNNNGG	7 cut(s)	69, 448, 519, 1472, 1870, 1996, 2748
AhdI	GACNNNNNGTC	1 cut(s)	1782
AjnI	CCWGG	3 cut(s)	306, 1864, 3283
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
Alw21I	GWGCWC	5 cut(s)	617, 695, 896, 2535, 2692
AlwNI	CAGNNNCTG	2 cut(s)	708, 1174
Ama87I	CYCGRG	2 cut(s)	863, 998
Aor13HI	TCCGGA	2 cut(s)	534, 1132
Aor51HI	AGCGCT	1 cut(s)	2220
ApaI	GGGCCC	1 cut(s)	526
ApeKI	GCWGC	7 cut(s)	516, 1165, 1891, 1894, 2810, 2813, 2922
ApoI	RAATTY	4 cut(s)	910, 2357, 2930, 3049
ArsI	GACNNNNNNTTYG	2 cut(s)	1562, 1594
AspLEI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 845, 2221
AspS9I	GGNCC	7 cut(s)	522, 523, 537, 658, 732, 925, 2345
AsuC2I	CCSGG	5 cut(s)	257, 278, 928, 1256, 1261
AsuII	TTCGAA	4 cut(s)	1074, 1349, 2463, 3079
AsuNHI	GCTAGC	1 cut(s)	1979
AvaI	CYCGRG	2 cut(s)	863, 998
AvaII	GGWCC	3 cut(s)	537, 658, 732
BaeGI	GKGCMC	2 cut(s)	526, 2188
BalI	TGGCCA	1 cut(s)	1803
BamHI	GGATCC	2 cut(s)	75, 1564
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	3 cut(s)	526, 617, 1511
BbsI	GAAGAC	8 cut(s)	391, 897, 982, 996, 1194, 1269, 1410, 1596
Bbv12I	GWGCWC	5 cut(s)	617, 695, 896, 2535, 2692
BbvI	GCAGC	7 cut(s)	528, 1177, 1881, 1903, 2797, 2800, 2934
BccI	CCATC	7 cut(s)	374, 988, 1102, 1240, 1466, 2272, 2627
BceAI	ACGGC	7 cut(s)	73, 338, 362, 368, 380, 396, 1048
BciT130I	CCWGG	3 cut(s)	308, 1866, 3285
BcnI	CCSGG	5 cut(s)	257, 278, 928, 1256, 1261
BfaI	CTAG	7 cut(s)	66, 1815, 1980, 2246, 2471, 2859, 3057
BfmI	CTRYAG	3 cut(s)	463, 1218, 3206
BfoI	RGCGCY	1 cut(s)	2222
BfuAI	ACCTGC	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	725
BlpI	GCTNAGC	2 cut(s)	1044, 2834
BmcAI	AGTACT	2 cut(s)	2142, 3038
Bme1390I	CCNGG	8 cut(s)	257, 278, 308, 928, 1256, 1261, 1866, 3285
Bme18I	GGWCC	3 cut(s)	537, 658, 732
BmeRI	GACNNNNNGTC	1 cut(s)	1782
BmeT110I	CYCGRG	2 cut(s)	863, 998
BmgT120I	GGNCC	7 cut(s)	522, 523, 537, 658, 732, 925, 2345
BmrFI	CCNGG	8 cut(s)	257, 278, 308, 928, 1256, 1261, 1866, 3285
BmrI	ACTGGG	2 cut(s)	1505, 3179
BmsI	GCATC	8 cut(s)	1247, 1312, 1526, 1652, 1704, 2230, 2566, 2728
BmtI	GCTAGC	1 cut(s)	1983
BmuI	ACTGGG	2 cut(s)	1505, 3179
BpiI	GAAGAC	8 cut(s)	391, 897, 982, 996, 1194, 1269, 1410, 1596
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
BpmI	CTGGAG	4 cut(s)	496, 647, 1142, 1806
Bpu10I	CCTNAGC	2 cut(s)	2124, 2180
Bpu1102I	GCTNAGC	2 cut(s)	1044, 2834
Bpu14I	TTCGAA	4 cut(s)	1074, 1349, 2463, 3079
BpuEI	CTTGAG	3 cut(s)	2519, 2591, 2979
BpuMI	CCSGG	5 cut(s)	257, 278, 928, 1256, 1261
Bsa29I	ATCGAT	1 cut(s)	1546
BsaAI	YACGTR	1 cut(s)	3333
BsaHI	GRCGYC	2 cut(s)	887, 1061
BsaI	GGTCTC	4 cut(s)	831, 1269, 1879, 2783
BsaWI	WCCGGW	8 cut(s)	534, 734, 788, 914, 1132, 1423, 1486, 1612
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 1607, 1637
Bsc4I	CCNNNNNNNGG	7 cut(s)	69, 448, 519, 1472, 1870, 1996, 2748
Bse118I	RCCGGY	8 cut(s)	69, 506, 539, 724, 854, 922, 1108, 1294
Bse3DI	GCAATG	3 cut(s)	508, 1955, 2415
BseAI	TCCGGA	2 cut(s)	534, 1132
BseBI	CCWGG	3 cut(s)	308, 1866, 3285
BseCI	ATCGAT	1 cut(s)	1546
BseGI	GGATG	4 cut(s)	1232, 2511, 3250, 3314
BseLI	CCNNNNNNNGG	7 cut(s)	69, 448, 519, 1472, 1870, 1996, 2748
BseMI	GCAATG	3 cut(s)	508, 1955, 2415
BseMII	CTCAG	6 cut(s)	715, 1035, 1181, 2121, 2794, 2889
BseSI	GKGCMC	2 cut(s)	526, 2188
BseX3I	CGGCCG	1 cut(s)	1257
BseXI	GCAGC	7 cut(s)	528, 1177, 1881, 1903, 2797, 2800, 2934
BsgI	GTGCAG	3 cut(s)	694, 1893, 1910
Bsh1236I	CGCG	5 cut(s)	594, 609, 621, 629, 2571
Bsh1285I	CGRYCG	2 cut(s)	1181, 1260
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	1546
BsiEI	CGRYCG	2 cut(s)	1181, 1260
BsiHKAI	GWGCWC	5 cut(s)	617, 695, 896, 2535, 2692
BsiHKCI	CYCGRG	2 cut(s)	863, 998
BslFI	GGGAC	3 cut(s)	667, 2143, 2575
BslI	CCNNNNNNNGG	7 cut(s)	69, 448, 519, 1472, 1870, 1996, 2748
BsmBI	CGTCTC	4 cut(s)	141, 732, 1332, 2699
BsmFI	GGGAC	3 cut(s)	667, 2143, 2575
Bso31I	GGTCTC	4 cut(s)	831, 1269, 1879, 2783
BsoBI	CYCGRG	2 cut(s)	863, 998
Bsp119I	TTCGAA	4 cut(s)	1074, 1349, 2463, 3079
Bsp120I	GGGCCC	1 cut(s)	522
Bsp1286I	GDGCHC	8 cut(s)	526, 617, 695, 896, 1511, 2188, 2535, 2692
Bsp13I	TCCGGA	2 cut(s)	534, 1132
Bsp1407I	TGTACA	1 cut(s)	2662
Bsp1720I	GCTNAGC	2 cut(s)	1044, 2834
Bsp19I	CCATGG	3 cut(s)	2817, 3043, 3292
BspCNI	CTCAG	6 cut(s)	714, 1036, 1182, 2120, 2793, 2890
BspDI	ATCGAT	1 cut(s)	1546
BspEI	TCCGGA	2 cut(s)	534, 1132
BspFNI	CGCG	5 cut(s)	594, 609, 621, 629, 2571
BspHI	TCATGA	1 cut(s)	2955
BspMI	ACCTGC	1 cut(s)	322
BspOI	GCTAGC	1 cut(s)	1983
BspQI	GCTCTTC	2 cut(s)	1499, 2292
BspT104I	TTCGAA	4 cut(s)	1074, 1349, 2463, 3079
BspT107I	GGYRCC	1 cut(s)	310
BspTNI	GGTCTC	4 cut(s)	831, 1269, 1879, 2783
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	3 cut(s)	508, 1955, 2415
BsrFI	RCCGGY	8 cut(s)	69, 506, 539, 724, 854, 922, 1108, 1294
BsrGI	TGTACA	1 cut(s)	2662
BssAI	RCCGGY	8 cut(s)	69, 506, 539, 724, 854, 922, 1108, 1294
BssNI	GRCGYC	2 cut(s)	887, 1061
BssT1I	CCWWGG	4 cut(s)	2817, 3015, 3043, 3292
Bst2UI	CCWGG	3 cut(s)	308, 1866, 3285
Bst4CI	ACNGT	6 cut(s)	580, 797, 1081, 1770, 1991, 3112
Bst6I	CTCTTC	7 cut(s)	114, 256, 741, 756, 1499, 1565, 2292
BstACI	GRCGYC	2 cut(s)	887, 1061
BstAPI	GCANNNNNTGC	1 cut(s)	1174
BstAUI	TGTACA	1 cut(s)	2662
BstBAI	YACGTR	1 cut(s)	3333
BstBI	TTCGAA	4 cut(s)	1074, 1349, 2463, 3079
BstDSI	CCRYGG	5 cut(s)	592, 2569, 2817, 3043, 3292
BstEII	GGTNACC	1 cut(s)	791
BstF5I	GGATG	4 cut(s)	1232, 2511, 3250, 3314
BstFNI	CGCG	5 cut(s)	594, 609, 621, 629, 2571
BstH2I	RGCGCY	1 cut(s)	2222
BstHHI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 845, 2221
BstMCI	CGRYCG	2 cut(s)	1181, 1260
BstNI	CCWGG	3 cut(s)	308, 1866, 3285
BstPI	GGTNACC	1 cut(s)	791
BstSCI	CCNGG	8 cut(s)	255, 276, 306, 926, 1254, 1259, 1864, 3283
BstSFI	CTRYAG	3 cut(s)	463, 1218, 3206
BstSLI	GKGCMC	2 cut(s)	526, 2188
BstSNI	TACGTA	1 cut(s)	3333
BstUI	CGCG	5 cut(s)	594, 609, 621, 629, 2571
BstV1I	GCAGC	7 cut(s)	528, 1177, 1881, 1903, 2797, 2800, 2934
BstV2I	GAAGAC	8 cut(s)	391, 897, 982, 996, 1194, 1269, 1410, 1596
BstX2I	RGATCY	4 cut(s)	75, 467, 782, 1564
BstXI	CCANNNNNNTGG	1 cut(s)	1962
BstYI	RGATCY	4 cut(s)	75, 467, 782, 1564
BstZI	CGGCCG	1 cut(s)	1257
Bsu15I	ATCGAT	1 cut(s)	1546
BsuTUI	ATCGAT	1 cut(s)	1546
BtgI	CCRYGG	5 cut(s)	592, 2569, 2817, 3043, 3292
BtgZI	GCGATG	1 cut(s)	1503
BtsCI	GGATG	4 cut(s)	1232, 2511, 3250, 3314
BtsI	GCAGTG	2 cut(s)	852, 1748
BtsIMutI	CAGTG	7 cut(s)	576, 695, 852, 967, 1605, 1748, 1893
BveI	ACCTGC	1 cut(s)	322
CaiI	CAGNNNCTG	2 cut(s)	708, 1174
CciI	TCATGA	1 cut(s)	2955
CfoI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 845, 2221
Cfr10I	RCCGGY	8 cut(s)	69, 506, 539, 724, 854, 922, 1108, 1294
Cfr13I	GGNCC	7 cut(s)	522, 523, 537, 658, 732, 925, 2345
Cfr42I	CCGCGG	2 cut(s)	595, 2572
ClaI	ATCGAT	1 cut(s)	1546
CpoI	CGGWCCG	2 cut(s)	537, 732
CseI	GACGC	3 cut(s)	1069, 1314, 1649
Csp6I	GTAC	6 cut(s)	172, 2141, 2317, 2663, 3037, 3330
CspI	CGGWCCG	2 cut(s)	537, 732
CviQI	GTAC	6 cut(s)	172, 2141, 2317, 2663, 3037, 3330
DraI	TTTAAA	1 cut(s)	2395
DrdI	GACNNNNNNGTC	1 cut(s)	2908
DriI	GACNNNNNGTC	1 cut(s)	1782
DseDI	GACNNNNNNGTC	1 cut(s)	2908
EaeI	YGGCCR	6 cut(s)	258, 279, 852, 1257, 1801, 2964
EagI	CGGCCG	1 cut(s)	1257
Eam1104I	CTCTTC	7 cut(s)	114, 256, 741, 756, 1499, 1565, 2292
Eam1105I	GACNNNNNGTC	1 cut(s)	1782
EarI	CTCTTC	7 cut(s)	114, 256, 741, 756, 1499, 1565, 2292
EciI	GGCGGA	5 cut(s)	88, 129, 361, 382, 1731
Ecl136II	GAGCTC	1 cut(s)	615
EclXI	CGGCCG	1 cut(s)	1257
Eco105I	TACGTA	1 cut(s)	3333
Eco130I	CCWWGG	4 cut(s)	2817, 3015, 3043, 3292
Eco147I	AGGCCT	1 cut(s)	1846
Eco24I	GRGCYC	3 cut(s)	526, 617, 1511
Eco31I	GGTCTC	4 cut(s)	831, 1269, 1879, 2783
Eco47I	GGWCC	3 cut(s)	537, 658, 732
Eco47III	AGCGCT	1 cut(s)	2220
Eco52I	CGGCCG	1 cut(s)	1257
Eco53kI	GAGCTC	1 cut(s)	615
Eco57I	CTGAAG	6 cut(s)	186, 1371, 1452, 1581, 2330, 2703
Eco88I	CYCGRG	2 cut(s)	863, 998
Eco91I	GGTNACC	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	791
EcoRI	GAATTC	1 cut(s)	3049
EcoRII	CCWGG	3 cut(s)	306, 1864, 3283
EcoT14I	CCWWGG	4 cut(s)	2817, 3015, 3043, 3292
EcoT38I	GRGCYC	3 cut(s)	526, 617, 1511
ErhI	CCWWGG	4 cut(s)	2817, 3015, 3043, 3292
Esp3I	CGTCTC	4 cut(s)	141, 732, 1332, 2699
FalI	AAGNNNNNCTT	6 cut(s)	93, 125, 2358, 2390, 2992, 3024
FaqI	GGGAC	3 cut(s)	667, 2143, 2575
FauI	CCCGC	7 cut(s)	238, 243, 512, 599, 681, 692, 2918
FblI	GTMKAC	1 cut(s)	648
FokI	GGATG	4 cut(s)	1219, 2518, 3237, 3301
FriOI	GRGCYC	3 cut(s)	526, 617, 1511
FspBI	CTAG	7 cut(s)	66, 1815, 1980, 2246, 2471, 2859, 3057
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	7 cut(s)	46, 361, 422, 608, 628, 844, 2220
GsuI	CTGGAG	4 cut(s)	496, 647, 1142, 1806
HaeII	RGCGCY	1 cut(s)	2222
HgaI	GACGC	3 cut(s)	1069, 1314, 1649
HhaI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 845, 2221
Hin1I	GRCGYC	2 cut(s)	887, 1061
Hin6I	GCGC	7 cut(s)	45, 360, 421, 607, 627, 843, 2219
HinP1I	GCGC	7 cut(s)	45, 360, 421, 607, 627, 843, 2219
HincII	GTYRAC	2 cut(s)	586, 649
HindII	GTYRAC	2 cut(s)	586, 649
HindIII	AAGCTT	6 cut(s)	802, 1383, 2339, 2516, 2609, 2852
Hpy166II	GTNNAC	5 cut(s)	586, 649, 920, 3229, 3259
Hpy8I	GTNNAC	5 cut(s)	586, 649, 920, 3229, 3259
HpyCH4III	ACNGT	6 cut(s)	580, 797, 1081, 1770, 1991, 3112
HpyCH4IV	ACGT	3 cut(s)	887, 2619, 3332
HpySE526I	ACGT	3 cut(s)	887, 2619, 3332
Hsp92I	GRCGYC	2 cut(s)	887, 1061
HspAI	GCGC	7 cut(s)	45, 360, 421, 607, 627, 843, 2219
Kpn2I	TCCGGA	2 cut(s)	534, 1132
KroI	GCCGGC	2 cut(s)	69, 506
KroNI	GCCGGC	2 cut(s)	71, 508
KspI	CCGCGG	2 cut(s)	595, 2572
LguI	GCTCTTC	2 cut(s)	1499, 2292
Lsp1109I	GCAGC	7 cut(s)	528, 1177, 1881, 1903, 2797, 2800, 2934
LweI	GCATC	8 cut(s)	1247, 1312, 1526, 1652, 1704, 2230, 2566, 2728
MaeI	CTAG	7 cut(s)	66, 1815, 1980, 2246, 2471, 2859, 3057
MaeII	ACGT	3 cut(s)	887, 2619, 3332
MaeIII	GTNAC	7 cut(s)	93, 704, 791, 930, 1482, 2194, 2870
MbiI	CCGCTC	1 cut(s)	670
MflI	RGATCY	4 cut(s)	75, 467, 782, 1564
MhlI	GDGCHC	8 cut(s)	526, 617, 695, 896, 1511, 2188, 2535, 2692
MlsI	TGGCCA	1 cut(s)	1803
MluNI	TGGCCA	1 cut(s)	1803
MlyI	GAGTC	7 cut(s)	644, 1010, 1201, 1771, 1927, 2816, 2948
MmeI	TCCRAC	5 cut(s)	345, 612, 796, 1082, 2309
Mox20I	TGGCCA	1 cut(s)	1803
MroI	TCCGGA	2 cut(s)	534, 1132
MroNI	GCCGGC	2 cut(s)	69, 506
MscI	TGGCCA	1 cut(s)	1803
MseI	TTAA	5 cut(s)	1949, 2337, 2394, 2622, 2850
MslI	CAYNNNNRTG	4 cut(s)	2948, 2954, 2960, 3092
Msp20I	TGGCCA	1 cut(s)	1803
MspA1I	CMGCKG	8 cut(s)	519, 594, 679, 1043, 1799, 1894, 2571, 2925
MspR9I	CCNGG	8 cut(s)	257, 278, 308, 928, 1256, 1261, 1866, 3285
MvaI	CCWGG	3 cut(s)	308, 1866, 3285
MvnI	CGCG	5 cut(s)	594, 609, 621, 629, 2571
NaeI	GCCGGC	2 cut(s)	71, 508
NciI	CCSGG	5 cut(s)	257, 278, 928, 1256, 1261
NcoI	CCATGG	3 cut(s)	2817, 3043, 3292
NgoMIV	GCCGGC	2 cut(s)	69, 506
NheI	GCTAGC	1 cut(s)	1979
NmeAIII	GCCGAG	5 cut(s)	552, 801, 1170, 2377, 2992
NmuCI	GTSAC	4 cut(s)	791, 930, 1482, 2194
NsbI	TGCGCA	1 cut(s)	46
NspV	TTCGAA	4 cut(s)	1074, 1349, 2463, 3079
PaeR7I	CTCGAG	1 cut(s)	863
PagI	TCATGA	1 cut(s)	2955
PaqCI	CACCTGC	1 cut(s)	322
PasI	CCCWGGG	1 cut(s)	1865
PceI	AGGCCT	1 cut(s)	1846
PciSI	GCTCTTC	2 cut(s)	1499, 2292
PcsI	WCGNNNNNNNCGW	5 cut(s)	393, 579, 606, 1346, 3315
PdiI	GCCGGC	2 cut(s)	71, 508
PleI	GAGTC	7 cut(s)	644, 1009, 1200, 1771, 1927, 2816, 2947
PpsI	GAGTC	7 cut(s)	644, 1009, 1200, 1771, 1927, 2816, 2947
Ppu21I	YACGTR	1 cut(s)	3333
PsiI	TTATAA	1 cut(s)	2981
Psp124BI	GAGCTC	1 cut(s)	617
Psp6I	CCWGG	3 cut(s)	306, 1864, 3283
PspEI	GGTNACC	1 cut(s)	791
PspGI	CCWGG	3 cut(s)	306, 1864, 3283
PspOMI	GGGCCC	1 cut(s)	522
PspPI	GGNCC	7 cut(s)	522, 523, 537, 658, 732, 925, 2345
PstNI	CAGNNNCTG	2 cut(s)	708, 1174
PsuI	RGATCY	4 cut(s)	75, 467, 782, 1564
PvuII	CAGCTG	3 cut(s)	1043, 1799, 1894
RsaI	GTAC	6 cut(s)	173, 2142, 2318, 2664, 3038, 3331
RsaNI	GTAC	6 cut(s)	172, 2141, 2317, 2663, 3037, 3330
RseI	CAYNNNNRTG	4 cut(s)	2948, 2954, 2960, 3092
Rsr2I	CGGWCCG	2 cut(s)	537, 732
RsrII	CGGWCCG	2 cut(s)	537, 732
SacI	GAGCTC	1 cut(s)	617
SacII	CCGCGG	2 cut(s)	595, 2572
SalI	GTCGAC	1 cut(s)	647
SapI	GCTCTTC	2 cut(s)	1499, 2292
SaqAI	TTAA	5 cut(s)	1949, 2337, 2394, 2622, 2850
Sau96I	GGNCC	7 cut(s)	522, 523, 537, 658, 732, 925, 2345
ScaI	AGTACT	2 cut(s)	2142, 3038
SchI	GAGTC	7 cut(s)	644, 1010, 1201, 1771, 1927, 2816, 2948
ScrFI	CCNGG	8 cut(s)	257, 278, 308, 928, 1256, 1261, 1866, 3285
SduI	GDGCHC	8 cut(s)	526, 617, 695, 896, 1511, 2188, 2535, 2692
SfaNI	GCATC	8 cut(s)	1247, 1312, 1526, 1652, 1704, 2230, 2566, 2728
SfcI	CTRYAG	3 cut(s)	463, 1218, 3206
Sfr274I	CTCGAG	1 cut(s)	863
Sfr303I	CCGCGG	2 cut(s)	595, 2572
SfuI	TTCGAA	4 cut(s)	1074, 1349, 2463, 3079
SgrAI	CRCCGGYG	2 cut(s)	1108, 1294
SgrBI	CCGCGG	2 cut(s)	595, 2572
SinI	GGWCC	3 cut(s)	537, 658, 732
SlaI	CTCGAG	1 cut(s)	863
SmiMI	CAYNNNNRTG	4 cut(s)	2948, 2954, 2960, 3092
SmlI	CTYRAG	4 cut(s)	863, 2534, 2606, 2994
SmoI	CTYRAG	4 cut(s)	863, 2534, 2606, 2994
SnaBI	TACGTA	1 cut(s)	3333
SseBI	AGGCCT	1 cut(s)	1846
SspI	AATATT	2 cut(s)	1129, 2167
SspMI	CTAG	7 cut(s)	66, 1815, 1980, 2246, 2471, 2859, 3057
SstI	GAGCTC	1 cut(s)	617
StuI	AGGCCT	1 cut(s)	1846
StyD4I	CCNGG	8 cut(s)	255, 276, 306, 926, 1254, 1259, 1864, 3283
StyI	CCWWGG	4 cut(s)	2817, 3015, 3043, 3292
TaaI	ACNGT	6 cut(s)	580, 797, 1081, 1770, 1991, 3112
TaiI	ACGT	3 cut(s)	890, 2622, 3335
TaqII	GACCGA	1 cut(s)	1330
TatI	WGTACW	4 cut(s)	2140, 2316, 2662, 3036
TauI	GCSGC	6 cut(s)	377, 624, 627, 670, 679, 1108
Tru1I	TTAA	5 cut(s)	1949, 2337, 2394, 2622, 2850
Tru9I	TTAA	5 cut(s)	1949, 2337, 2394, 2622, 2850
TscAI	CASTG	7 cut(s)	583, 695, 852, 967, 1605, 1755, 1893
TseFI	GTSAC	4 cut(s)	791, 930, 1482, 2194
TseI	GCWGC	7 cut(s)	516, 1165, 1891, 1894, 2810, 2813, 2922
Tsp45I	GTSAC	4 cut(s)	791, 930, 1482, 2194
TspGWI	ACGGA	2 cut(s)	123, 1663
TspRI	CASTG	7 cut(s)	583, 695, 852, 967, 1605, 1755, 1893
VpaK11BI	GGWCC	3 cut(s)	537, 658, 732
XapI	RAATTY	4 cut(s)	910, 2357, 2930, 3049
XbaI	TCTAGA	3 cut(s)	1814, 2470, 2858
XhoI	CTCGAG	1 cut(s)	863
XmiI	GTMKAC	1 cut(s)	648
XspI	CTAG	7 cut(s)	66, 1815, 1980, 2246, 2471, 2859, 3057
ZraI	GACGTC	1 cut(s)	888
ZrmI	AGTACT	2 cut(s)	2142, 3038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.