Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010985

Physical Location & Seq

Genomic Coordinates Reverse (-)

40394457 .. 40396339

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0257200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGCTCGACTTCATGTCCTTCCAACTCCAACACCACCATTCCGGTAGTGTCAACCGTATCTTCTTTGGAGATCCCATCTTCAGGTCACAAAAGGTCCGATCCTTCACCCCAAATGCCCATTAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACAAAGGCATTGTGTCATGCAAGGACTAAGAAGATGGAGAGGCTTTTTCTGGACCCGCCAATGGACGCTCCCCCACAGAGCGAATTGCTCAACAAAACTCCCTCGCAGAGCAGGACTACGATTCTCTACAATTTCTCTACGGATTTTACATTGAGGGAGCAGTATTCGGATCCTTGGAATGAGGTTAGAATTGGGAAGTTGCTCGAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTCAAGCACTGCTATGATCTTGACAGCACAATGCGGCCGCTCTTGCTGGTCACTGCATCTGTTGAAAACATTGTGCTGAAGAAGACAATTAGTGTTGAAATTGACCTGAAAGAAGAAGTTAATCCTGATCAGCCCCTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCAGTACTCAGGTCCAGTGAGTACGTCCCGAGGCAAAGGCCACGAAAAATGGATTTAGGATACGGAATGTGGTTCCAGCAACAGAAGAAGAAGCACGACGTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004655 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046872 GO:0046914 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

ALAD

Protein Analysis

223

Amino Acids

25.21

Weight (kDa)

7.74

Isoelectric Point (pI)

63.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69740 AT1G69740 AT1G69740
fragaria_vesca	FvH4_2g27170 FvH4_2g27170 FvH4_2g27170
malus_domestica	MD08G1161600.v1.1 MD15G1346700.v1.1
prunus_persica	Prupe.1G494300_v2.0.a1 Prupe.1G494300_v2.0.a1
pyrus_communis	pycom08g13890 pycom15g31050
rosa_chinensis	RchiOBHm_Chr6g0296081
rosa_laevigata	RLG00000011735
rosa_multiflora	Rmu_sc0003139.1_g000032
rosa_roxburghii	Rroxscaffold_7G00171840
rosa_rugosa	Rorug06G0257100 Rorug06G0257200
rosa_samantha	Rh6AG370400
rosa_wichuraiana	Rw6G032280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	666
AciI	CCGC	3 cut(s)	212, 427, 431
AclWI	GGATC	4 cut(s)	67, 95, 320, 333
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	2 cut(s)	66, 491
AfaI	GTAC	2 cut(s)	570, 587
AfiI	CCNNNNNNNGG	3 cut(s)	83, 151, 217
AgsI	TTSAA	3 cut(s)	458, 491, 542
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	2 cut(s)	126, 380
AluI	AGCT	2 cut(s)	126, 380
AlwI	GGATC	4 cut(s)	67, 95, 320, 333
AlwNI	CAGNNNCTG	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	4 cut(s)	131, 428, 563, 602
Asp700I	GAANNNNTTC	1 cut(s)	388
AspS9I	GGNCC	4 cut(s)	96, 132, 208, 576
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	99, 166
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	3 cut(s)	96, 208, 576
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	369, 482
BccI	CCATC	2 cut(s)	85, 184
BciT130I	CCWGG	1 cut(s)	562
BciVI	GTATCC	1 cut(s)	617
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	135
BfaI	CTAG	2 cut(s)	377, 670
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	2 cut(s)	428, 431
BlsI	GCNGC	2 cut(s)	429, 432
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	2 cut(s)	135, 562
Bme18I	GGWCC	3 cut(s)	96, 208, 576
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	4 cut(s)	96, 132, 208, 576
BmiI	GGNNCC	4 cut(s)	210, 327, 385, 638
BmrFI	CCNGG	2 cut(s)	135, 562
BmsI	GCATC	2 cut(s)	361, 458
BpiI	GAAGAC	2 cut(s)	369, 482
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	329, 593
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 151, 217
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	566, 579
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	329, 593
BseLI	CCNNNNNNNGG	3 cut(s)	83, 151, 217
BseMII	CTCAG	1 cut(s)	586
BseNI	ACTGG	2 cut(s)	566, 579
BseX3I	CGGCCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	431
BshFI	GGCC	4 cut(s)	133, 430, 565, 604
BsiEI	CGRYCG	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	3 cut(s)	44, 135, 152
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	83, 151, 217
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	4 cut(s)	133, 430, 565, 604
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	72, 100, 325, 409, 520
BspACI	CCGC	3 cut(s)	212, 427, 431
BspANI	GGCC	4 cut(s)	133, 430, 565, 604
BspCNI	CTCAG	1 cut(s)	585
BspLI	GGNNCC	4 cut(s)	210, 327, 385, 638
BspPI	GGATC	4 cut(s)	67, 95, 320, 333
BsrBI	CCGCTC	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	566, 579
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	329, 593
BssMI	GATC	5 cut(s)	72, 100, 325, 409, 520
BssNAI	GTATAC	1 cut(s)	667
BssT1I	CCWWGG	1 cut(s)	329
Bst1107I	GTATAC	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	183, 572
BstKTI	GATC	5 cut(s)	75, 103, 328, 412, 523
BstMBI	GATC	5 cut(s)	72, 100, 325, 409, 520
BstMCI	CGRYCG	1 cut(s)	431
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	133, 560
BstV2I	GAAGAC	2 cut(s)	369, 482
BstX2I	RGATCY	2 cut(s)	72, 325
BstYI	RGATCY	2 cut(s)	72, 325
BstZ17I	GTATAC	1 cut(s)	667
BstZI	CGGCCG	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	4 cut(s)	133, 430, 565, 604
BtsI	GCAGTG	2 cut(s)	400, 444
BtsIMutI	CAGTG	3 cut(s)	400, 444, 586
CaiI	CAGNNNCTG	1 cut(s)	529
CciNI	GCGGCCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	96, 132, 208, 576
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	569, 586
CviAII	CATG	3 cut(s)	15, 173, 554
CviJI	RGCY	9 cut(s)	6, 126, 133, 199, 380, 430, 526, 565, 604
CviKI_1	RGCY	9 cut(s)	6, 126, 133, 199, 380, 430, 526, 565, 604
CviQI	GTAC	2 cut(s)	569, 586
DdeI	CTNAG	2 cut(s)	183, 572
DpnI	GATC	5 cut(s)	74, 102, 327, 411, 522
DpnII	GATC	5 cut(s)	72, 100, 325, 409, 520
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	428
EagI	CGGCCG	1 cut(s)	428
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	96, 208, 576
Eco52I	CGGCCG	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	66, 491
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	3 cut(s)	18, 176, 557
FaiI	YATR	5 cut(s)	16, 174, 408, 555, 667
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	3 cut(s)	14, 172, 553
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	2 cut(s)	428, 431
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	428, 431
FspBI	CTAG	2 cut(s)	377, 670
GluI	GCNGC	2 cut(s)	428, 431
HaeIII	GGCC	4 cut(s)	133, 430, 565, 604
HapII	CCGG	3 cut(s)	44, 135, 152
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	18, 176, 557
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	44, 135, 152
HphI	GGTGA	2 cut(s)	99, 166
Hpy166II	GTNNAC	2 cut(s)	54, 667
Hpy188I	TCNGA	2 cut(s)	100, 325
Hpy188III	TCNNGA	4 cut(s)	206, 413, 518, 592
Hpy8I	GTNNAC	2 cut(s)	54, 667
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	2 cut(s)	30, 114
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	588, 663
HpyCH4V	TGCA	2 cut(s)	176, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	2 cut(s)	183, 572
HpySE526I	ACGT	2 cut(s)	588, 663
Hsp92II	CATG	3 cut(s)	18, 176, 557
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	72, 100, 325, 409, 520
LmnI	GCTCC	2 cut(s)	229, 313
LweI	GCATC	2 cut(s)	361, 458
MaeI	CTAG	2 cut(s)	377, 670
MaeII	ACGT	2 cut(s)	588, 663
MaeIII	GTNAC	4 cut(s)	86, 154, 442, 556
MalI	GATC	5 cut(s)	74, 102, 327, 411, 522
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	5 cut(s)	72, 100, 325, 409, 520
MboII	GAAGA	9 cut(s)	54, 72, 199, 374, 484, 487, 518, 661, 664
MflI	RGATCY	2 cut(s)	72, 325
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	239, 286, 345, 480, 492
MmeI	TCCRAC	2 cut(s)	48, 54
MnlI	CCTC	5 cut(s)	189, 268, 303, 331, 588
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	3 cut(s)	44, 135, 152
MspR9I	CCNGG	2 cut(s)	135, 562
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	436
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	72, 100, 325, 409, 520
NlaIII	CATG	3 cut(s)	18, 176, 557
NlaIV	GGNNCC	4 cut(s)	210, 327, 385, 638
NmuCI	GTSAC	3 cut(s)	86, 154, 442
NotI	GCGGCCGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	429, 432
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	4 cut(s)	210, 327, 385, 638
PspPI	GGNCC	4 cut(s)	96, 132, 208, 576
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	2 cut(s)	72, 325
RsaI	GTAC	2 cut(s)	570, 587
RsaNI	GTAC	2 cut(s)	569, 586
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	2 cut(s)	428, 431
Sau3AI	GATC	5 cut(s)	72, 100, 325, 409, 520
Sau96I	GGNCC	4 cut(s)	96, 132, 208, 576
ScaI	AGTACT	1 cut(s)	570
ScrFI	CCNGG	2 cut(s)	135, 562
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	361, 458
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	3 cut(s)	96, 208, 576
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	5 cut(s)	239, 286, 345, 480, 492
SsiI	CCGC	3 cut(s)	212, 427, 431
SspMI	CTAG	2 cut(s)	377, 670
StyD4I	CCNGG	2 cut(s)	133, 560
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	2 cut(s)	591, 666
TaqI	TCGA	2 cut(s)	8, 360
TasI	AATT	5 cut(s)	239, 286, 345, 480, 492
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	2 cut(s)	430, 433
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	3 cut(s)	407, 451, 586
TseFI	GTSAC	3 cut(s)	86, 154, 442
Tsp45I	GTSAC	3 cut(s)	86, 154, 442
TspGWI	ACGGA	2 cut(s)	311, 642
TspRI	CASTG	3 cut(s)	407, 451, 586
VpaK11BI	GGWCC	3 cut(s)	96, 208, 576
XmiI	GTMKAC	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	377, 670
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.