RchiOBHm_Chr7g0193101

ATPase ASNA1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
11534896 .. 11536835
1940 bp
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UTR
Exon/CDS
Intron
PRQ17265

Sequence Viewer

Length: 159 bp
ATGCTAGGTGGTAAAGGTGGAGTTGGAAAGACGAGCTGTGCAGCTTCAGTTGCTCTAAAGTTTGCTAACAATGGGCATCCCACTCTTGTGGTTTCCACGGATCCAACACATTCCTTGAGTGATTCCCTGTGCAGCTTCACTTGCTGTAAAGTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.2

Weight (kDa)

8.37

Isoelectric Point (pI)

11.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArsA_ATPase PF02374 1 - 43 8e-18 Anion-transporting ATPase
CbiA PF01656 2 - 41 4.6e-07 CobQ/CobB/MinD/ParA nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025146)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0193101
rosa_laevigata RLG00000013382 RLG00000027239

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 95, 108
AcuI CTGAAG 1 cut(s) 30
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 3 cut(s) 36, 44, 135
AluI AGCT 3 cut(s) 36, 44, 135
AlwI GGATC 2 cut(s) 95, 108
ApeKI GCWGC 2 cut(s) 41, 132
BamHI GGATCC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 53, 144
BfaI CTAG 2 cut(s) 5, 157
BisI GCNGC 2 cut(s) 42, 133
BlsI GCNGC 2 cut(s) 43, 134
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 53, 144
BsgI GTGCAG 2 cut(s) 60, 151
Bsp143I GATC 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 2 cut(s) 95, 108
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 50, 141
BstV1I GCAGC 2 cut(s) 53, 144
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 76
CviJI RGCY 3 cut(s) 36, 44, 135
CviKI_1 RGCY 3 cut(s) 36, 44, 135
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 42, 133
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 42, 133
FspBI CTAG 2 cut(s) 5, 157
GluI GCNGC 2 cut(s) 42, 133
HinfI GANTC 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 41, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 141
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 1 cut(s) 140
Lsp1109I GCAGC 2 cut(s) 53, 144
LweI GCATC 1 cut(s) 85
MaeI CTAG 2 cut(s) 5, 157
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MflI RGATCY 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 4, 128
MslI CAYNNNNRTG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 50, 141
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 102
OliI CACNNNNGTG 1 cut(s) 86
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 43, 134
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 2 cut(s) 42, 133
Sau3AI GATC 1 cut(s) 100
SetI ASST 5 cut(s) 10, 19, 38, 46, 137
SfaNI GCATC 1 cut(s) 85
SgeI CNNG 7 cut(s) 17, 45, 98, 109, 127, 139, 153
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SspMI CTAG 2 cut(s) 5, 157
TfiI GAWTC 1 cut(s) 122
TseI GCWGC 2 cut(s) 41, 132
TspGWI ACGGA 1 cut(s) 113
XspI CTAG 2 cut(s) 5, 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.