RLG00000027239

ATPase ASNA1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0025146
Physical Location & Seq
Forward (+)
9845549 .. 9846503
955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027239

Sequence Viewer

Length: 369 bp
ATGTTAAGTTATTGTTTCCGGAAAGCTATGATCTATGGAGCTACCAGTTCAGTTACTGTTCAGCAAGCAAAACGTAATGTATCTCAGCGAAAGCTTGACTGCGTAGTGGAGTCTGACAGAATAAGATCCTTTTCATTCAACTATGTTTTAATTTTGTCAGTGAGATCAGTGGCCACTCCTGCGGAAGCTGTTACCAGGTTTGAAGAGATGGTTGCTGGGACTCAGCGAAAGTATTACATGCTAGGTGGTAAAGGTGGAGTTGGAAAGACGAGCTGTGCAGCTTCACTTGCTATAAAGTTTGCTAACAATGGGCATCCCAGTCTTGTGATTTCCACTGATCCAGCACATTCCTTGGCTGCTGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArsA_ATPase

Protein Analysis

123

Amino Acids

13.23

Weight (kDa)

9.47

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArsA_ATPase PF02374 77 - 119 3.1e-16 Anion-transporting ATPase
CbiA PF01656 81 - 119 4.9e-07 CobQ/CobB/MinD/ParA nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025146)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0193101
rosa_laevigata RLG00000013382 RLG00000027239

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 1 cut(s) 182
AclWI GGATC 2 cut(s) 120, 332
AcoI YGGCCR 1 cut(s) 171
AgsI TTSAA 2 cut(s) 139, 203
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 6 cut(s) 26, 41, 94, 188, 273, 281
AluI AGCT 6 cut(s) 26, 41, 94, 188, 273, 281
AlwI GGATC 2 cut(s) 120, 332
AlwNI CAGNNNCTG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 278, 356
BalI TGGCCA 1 cut(s) 173
BbvI GCAGC 2 cut(s) 290, 343
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 242
BisI GCNGC 2 cut(s) 279, 357
BlsI GCNGC 2 cut(s) 280, 358
Bme1390I CCNGG 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 351
BsaWI WCCGGW 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 45, 318
BseAI TCCGGA 1 cut(s) 18
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 98, 236
BseNI ACTGG 2 cut(s) 45, 318
BseXI GCAGC 2 cut(s) 290, 343
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 4 cut(s) 30, 125, 164, 337
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 97, 235
BspEI TCCGGA 1 cut(s) 18
BspPI GGATC 2 cut(s) 120, 332
BsrI ACTGG 2 cut(s) 45, 318
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 4 cut(s) 30, 125, 164, 337
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 84, 222
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 4 cut(s) 33, 128, 167, 340
BstMBI GATC 4 cut(s) 30, 125, 164, 337
BstMWI GCNNNNNNNGC 2 cut(s) 179, 287
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 290, 343
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 3 cut(s) 165, 174, 333
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 194
CviAII CATG 1 cut(s) 238
CviJI RGCY 8 cut(s) 26, 41, 94, 173, 188, 273, 281, 356
CviKI_1 RGCY 8 cut(s) 26, 41, 94, 173, 188, 273, 281, 356
DdeI CTNAG 2 cut(s) 84, 222
DpnI GATC 4 cut(s) 32, 127, 166, 339
DpnII GATC 4 cut(s) 30, 125, 164, 337
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 1 cut(s) 241
FaiI YATR 5 cut(s) 29, 36, 144, 239, 293
FaqI GGGAC 1 cut(s) 232
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 279, 357
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 279, 357
FspBI CTAG 1 cut(s) 242
GluI GCNGC 2 cut(s) 279, 357
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 19
Hin1II CATG 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 110, 220
HpaII CCGG 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 287
HpyF3I CTNAG 2 cut(s) 84, 222
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 1 cut(s) 241
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 30, 125, 164, 337
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 8 cut(s) 32, 58, 181, 192, 201, 208, 331, 354
Lsp1109I GCAGC 2 cut(s) 290, 343
LweI GCATC 1 cut(s) 322
MabI ACCWGGT 1 cut(s) 194
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 52, 190
MalI GATC 4 cut(s) 32, 127, 166, 339
MboI GATC 4 cut(s) 30, 125, 164, 337
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 1 cut(s) 150
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 2 cut(s) 119, 214
MmeI TCCRAC 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 173
MroI TCCGGA 1 cut(s) 18
MscI TGGCCA 1 cut(s) 173
MseI TTAA 2 cut(s) 5, 149
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 179, 287
NdeII GATC 4 cut(s) 30, 125, 164, 337
NlaIII CATG 1 cut(s) 241
NspI RCATGY 1 cut(s) 241
PkrI GCNGC 2 cut(s) 280, 358
PleI GAGTC 2 cut(s) 118, 214
PpsI GAGTC 2 cut(s) 118, 214
Psp6I CCWGG 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 125
SaqAI TTAA 2 cut(s) 5, 149
SatI GCNGC 2 cut(s) 279, 357
Sau3AI GATC 4 cut(s) 30, 125, 164, 337
SchI GAGTC 2 cut(s) 119, 214
ScrFI CCNGG 1 cut(s) 196
SexAI ACCWGGT 1 cut(s) 194
SfaNI GCATC 1 cut(s) 322
Sse9I AATT 1 cut(s) 150
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 76
TasI AATT 1 cut(s) 150
Tru1I TTAA 2 cut(s) 5, 149
Tru9I TTAA 2 cut(s) 5, 149
TscAI CASTG 3 cut(s) 165, 174, 340
TseI GCWGC 2 cut(s) 278, 356
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 3 cut(s) 165, 174, 340
XceI RCATGY 1 cut(s) 241
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.