RLG00000013382

Arsenical pump-driving

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0025146
Physical Location & Seq
Reverse (-)
30598686 .. 30599672
987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013382

Sequence Viewer

Length: 369 bp
ATGTTAAGTTATTGTTTCCGGAAAGCTATGATCTATGGAGCTACCAGTTCAGTTACTGTTCAGCAAGCAAAACGTAATGTATCTCAGCGAAAGCTTGACTGCGTAGTGGAGTTTGACAGAATAAGATCCTTTTCATTCAACTATGTTTTAATTTTGTCAGTGAGATCAGTGGCCACTCATGCGGAAGCTGTTACCGGGTTTGAAGAGATGGTTGCTGGGACTCAGCGAAAGTATTACATGCTAGGTGGTAAAGGTGGAGTTGGAAAGACGGGCTATGCAGCTTCACTTGCTATAAAGTTTGCTAACAATGGGCATCCCACTCTTGTGGTTTCCACTGATCTAGCACATTCATTGGCTGCTGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArsA_ATPase

Protein Analysis

123

Amino Acids

13.28

Weight (kDa)

9.39

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArsA_ATPase PF02374 77 - 119 1.3e-13 Anion-transporting ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025146)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0193101
rosa_laevigata RLG00000013382 RLG00000027239

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 171
AgsI TTSAA 2 cut(s) 139, 203
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 5 cut(s) 26, 41, 94, 188, 281
AluI AGCT 5 cut(s) 26, 41, 94, 188, 281
AlwI GGATC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 278, 356
AsuC2I CCSGG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 173
BbvI GCAGC 2 cut(s) 290, 343
BccI CCATC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 2 cut(s) 242, 341
BisI GCNGC 2 cut(s) 279, 357
BlsI GCNGC 2 cut(s) 280, 358
Bme1390I CCNGG 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 45
BseAI TCCGGA 1 cut(s) 18
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 98, 236
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 290, 343
BseYI CCCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 173
BsiSI CCGG 2 cut(s) 19, 195
BslFI GGGAC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 4 cut(s) 30, 125, 164, 337
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 97, 235
BspEI TCCGGA 1 cut(s) 18
BspPI GGATC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 45
BssMI GATC 4 cut(s) 30, 125, 164, 337
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 84, 222
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 4 cut(s) 33, 128, 167, 340
BstMBI GATC 4 cut(s) 30, 125, 164, 337
BstMWI GCNNNNNNNGC 2 cut(s) 179, 287
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 290, 343
BstX2I RGATCY 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 3 cut(s) 165, 174, 333
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 56
CviAII CATG 2 cut(s) 179, 238
CviJI RGCY 8 cut(s) 26, 41, 94, 173, 188, 273, 281, 356
CviKI_1 RGCY 8 cut(s) 26, 41, 94, 173, 188, 273, 281, 356
DdeI CTNAG 2 cut(s) 84, 222
DpnI GATC 4 cut(s) 32, 127, 166, 339
DpnII GATC 4 cut(s) 30, 125, 164, 337
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
FaeI CATG 2 cut(s) 182, 241
FaiI YATR 7 cut(s) 29, 36, 144, 180, 239, 276, 293
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 178, 237
Fnu4HI GCNGC 2 cut(s) 279, 357
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 279, 357
FspBI CTAG 2 cut(s) 242, 341
GluI GCNGC 2 cut(s) 279, 357
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 173
HapII CCGG 2 cut(s) 19, 195
Hin1II CATG 2 cut(s) 182, 241
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 220
HpaII CCGG 2 cut(s) 19, 195
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 287
HpyF3I CTNAG 2 cut(s) 84, 222
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 2 cut(s) 182, 241
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 30, 125, 164, 337
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 32, 58, 201, 208
Lsp1109I GCAGC 2 cut(s) 290, 343
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 242, 341
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 52, 190
MalI GATC 4 cut(s) 32, 127, 166, 339
MboI GATC 4 cut(s) 30, 125, 164, 337
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 1 cut(s) 150
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 173
MroI TCCGGA 1 cut(s) 18
MscI TGGCCA 1 cut(s) 173
MseI TTAA 2 cut(s) 5, 149
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 2 cut(s) 19, 195
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 179, 287
NciI CCSGG 1 cut(s) 196
NdeII GATC 4 cut(s) 30, 125, 164, 337
NlaIII CATG 2 cut(s) 182, 241
NspI RCATGY 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 323
PkrI GCNGC 2 cut(s) 280, 358
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 5, 149
SatI GCNGC 2 cut(s) 279, 357
Sau3AI GATC 4 cut(s) 30, 125, 164, 337
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 196
SetI ASST 8 cut(s) 28, 43, 76, 96, 190, 247, 256, 283
SfaNI GCATC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 1 cut(s) 150
SsiI CCGC 1 cut(s) 182
SspMI CTAG 2 cut(s) 242, 341
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 76
TasI AATT 1 cut(s) 150
Tru1I TTAA 2 cut(s) 5, 149
Tru9I TTAA 2 cut(s) 5, 149
TscAI CASTG 3 cut(s) 165, 174, 340
TseI GCWGC 2 cut(s) 278, 356
TspDTI ATGAA 2 cut(s) 123, 339
TspRI CASTG 3 cut(s) 165, 174, 340
XceI RCATGY 1 cut(s) 241
XspI CTAG 2 cut(s) 242, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.