Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022809

Physical Location & Seq

Genomic Coordinates Reverse (-)

15302808 .. 15302993

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCTCCTCCATCTTGGAAGCTTCCCGGTGGTCGTCGTGTCCTCCGCGGAGGCTGCCGCCCAGCTCTTCAAAACACATGACCTCGCATTCTCCTCCAGACCCCCCAAGTTGATCGCCTACGGCAAGCTTCTCTATAACTACAAGGACGTGGGCTCGGCACCATATGCCGAGTATTGGAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

61

Amino Acids

6.82

Weight (kDa)

9.1

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022809)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192091 RchiOBHm_Chr7g0197331
rosa_samantha	Rh7BG166400 Rh7DG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	45, 47, 57
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	148
AluBI	AGCT	3 cut(s)	21, 64, 127
AluI	AGCT	3 cut(s)	21, 64, 127
ApeKI	GCWGC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	45, 47, 57
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	45
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 164
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	125
Cfr42I	CCGCGG	1 cut(s)	48
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	5 cut(s)	21, 53, 64, 127, 153
CviKI_1	RGCY	5 cut(s)	21, 53, 64, 127, 153
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	155
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	78, 135, 163, 165
FatI	CATG	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	54, 57
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	54, 57
GluI	GCNGC	2 cut(s)	54, 57
GsaI	CCCAGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	79
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	80
HindIII	AAGCTT	2 cut(s)	19, 125
HpaII	CCGG	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 164
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	80
KspI	CCGCGG	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	111
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	39, 74, 109
Lsp1109I	GCAGC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	17, 43, 52, 92, 103, 171
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	86
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	53, 164
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	55, 58
PspFI	CCCAGC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	159
SacII	CCGCGG	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	71
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	5 cut(s)	23, 66, 84, 129, 150
Sfr303I	CCGCGG	1 cut(s)	48
SgrBI	CCGCGG	1 cut(s)	48
SsiI	CCGC	3 cut(s)	45, 47, 57
StyD4I	CCNGG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	150
TauI	GCSGC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.