Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0022809

Physical Location & Seq

Genomic Coordinates Reverse (-)

14828936 .. 14842505

Gene Structure 13570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG165700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACCAGCAACGGCGTCGTCATCTTTGCTTCACTGGGAGTTACAAGTGAGTTGGTTGAAGGTAGCGGCGGCAGTGGTGGTGGGTTCGATCTCAAGAGCGGTGACCTCGCGAATTGCTGGATCGAATTTGACAGAGAAGAAGTAGAGCATTATCCAAATGATCATGGACCTGATCATCAAAGAAACCTTGTCGATCGATATGTCTTTTTACCATTTCTCTCTTCCTCCTATACATATGGTCCTTCTCCGCTACCACTACTAAAATCTCACCACCTTCTCCAATCTCCACCAAAGCTCCCTATCATTGGAAACCTTCACCAACTTAAAGGCCCTTACATTCACCGCTCACTCCAAGCCTTGTCCCAACGCCATGGCGCCCCTGATCTCATGCTCCTCCATCTTGGAAGCTTCCCGGTGGTCGTCGTTTCCTCCGCGGAGGCTGCCGCCCAGCTCTTCAAAACACATGACCTCGCATTCTCCTCCAGACCCCCCAAGTTGATCGCCTACGGCAAGCTTCTCTACAACTACAAGGACGTGGGCTCGGCACCATATGGCGAGTATTGGAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

190

Amino Acids

20.93

Weight (kDa)

6.54

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	95 - 189	2.3e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022809)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192091 RchiOBHm_Chr7g0197331
rosa_samantha	Rh7BG166400 Rh7DG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	374, 544
AccBSI	CCGCTC	2 cut(s)	99, 345
AccII	CGCG	2 cut(s)	110, 434
AciI	CCGC	8 cut(s)	66, 69, 99, 248, 343, 432, 434, 444
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	2 cut(s)	15, 375
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	59, 457
AjiI	CACGTC	1 cut(s)	535
AluBI	AGCT	4 cut(s)	295, 408, 451, 514
AluI	AGCT	4 cut(s)	295, 408, 451, 514
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	167, 239, 329
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	4 cut(s)	113, 260, 308, 332
AvaII	GGWCC	2 cut(s)	167, 239
BanI	GGYRCC	2 cut(s)	374, 544
BanII	GRGCYC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	405
BceAI	ACGGC	2 cut(s)	28, 523
BcgI	CGANNNNNNTGC	1 cut(s)	32
BclI	TGATCA	2 cut(s)	160, 172
BcnI	CCSGG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	378
BisI	GCNGC	4 cut(s)	67, 70, 441, 444
BlsI	GCNGC	4 cut(s)	68, 71, 442, 445
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	2 cut(s)	167, 239
BmgBI	CACGTC	1 cut(s)	535
BmgT120I	GGNCC	3 cut(s)	167, 239, 329
BmiI	GGNNCC	2 cut(s)	376, 546
BmrFI	CCNGG	1 cut(s)	413
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	196
BsaHI	GRCGYC	2 cut(s)	15, 375
BsaJI	CCNNGG	2 cut(s)	370, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	370, 432
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	383, 469
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	447
Bsh1236I	CGCG	2 cut(s)	110, 434
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	330
BshNI	GGYRCC	2 cut(s)	374, 544
BshVI	ATCGAT	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
Bsp19I	CCATGG	1 cut(s)	370
Bsp68I	TCGCGA	1 cut(s)	110
BspACI	CCGC	8 cut(s)	66, 69, 99, 248, 343, 432, 434, 444
BspANI	GGCC	1 cut(s)	330
BspDI	ATCGAT	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	110, 434
BspLI	GGNNCC	2 cut(s)	376, 546
BspPI	GGATC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	458
BspT107I	GGYRCC	2 cut(s)	374, 544
BsrBI	CCGCTC	2 cut(s)	99, 345
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	370, 432
BssMI	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
BssNI	GRCGYC	2 cut(s)	15, 375
BssT1I	CCWWGG	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	226, 458
BstACI	GRCGYC	2 cut(s)	15, 375
BstC8I	GCNNGC	1 cut(s)	512
BstDSI	CCRYGG	2 cut(s)	370, 432
BstEII	GGTNACC	1 cut(s)	101
BstFNI	CGCG	2 cut(s)	110, 434
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	7 cut(s)	91, 123, 163, 175, 196, 385, 501
BstMBI	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	411
BstUI	CGCG	2 cut(s)	110, 434
BstV1I	GCAGC	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	2 cut(s)	370, 432
BtrI	CACGTC	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	32, 79
BtuMI	TCGCGA	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	512
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	167, 239, 329
Cfr42I	CCGCGG	1 cut(s)	435
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	1 cut(s)	4
CviAII	CATG	4 cut(s)	164, 371, 388, 464
CviJI	RGCY	8 cut(s)	295, 330, 356, 408, 440, 451, 514, 540
CviKI_1	RGCY	8 cut(s)	295, 330, 356, 408, 440, 451, 514, 540
DinI	GGCGCC	1 cut(s)	376
DpnI	GATC	7 cut(s)	90, 122, 162, 174, 195, 384, 500
DpnII	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
Eam1104I	CTCTTC	2 cut(s)	226, 458
EarI	CTCTTC	2 cut(s)	226, 458
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	167, 239
Eco91I	GGTNACC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	542
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	167, 374, 391, 467
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	4 cut(s)	163, 370, 387, 463
FauNDI	CATATG	2 cut(s)	235, 550
FbaI	TGATCA	2 cut(s)	160, 172
Fnu4HI	GCNGC	4 cut(s)	67, 70, 441, 444
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	67, 70, 441, 444
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	4 cut(s)	67, 70, 441, 444
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	466
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	2 cut(s)	15, 375
Hin1II	CATG	4 cut(s)	167, 374, 391, 467
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HindIII	AAGCTT	2 cut(s)	406, 512
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	4 cut(s)	113, 260, 308, 332
Hpy188III	TCNNGA	3 cut(s)	94, 109, 483
Hpy99I	CGWCG	2 cut(s)	20, 425
HpyAV	CCTTC	4 cut(s)	53, 252, 284, 323
HpyCH4IV	ACGT	1 cut(s)	534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	534
Hsp92I	GRCGYC	2 cut(s)	15, 375
Hsp92II	CATG	4 cut(s)	167, 374, 391, 467
HspAI	GCGC	1 cut(s)	375
KasI	GGCGCC	1 cut(s)	374
Ksp22I	TGATCA	2 cut(s)	160, 172
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	300, 396
LpnPI	CCDG	8 cut(s)	19, 20, 103, 183, 393, 426, 461, 496
Lsp1109I	GCAGC	1 cut(s)	427
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	40, 101
MalI	GATC	7 cut(s)	90, 122, 162, 174, 195, 384, 500
MbiI	CCGCTC	2 cut(s)	99, 345
MboI	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
MboII	GAAGA	3 cut(s)	149, 213, 445
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	2 cut(s)	112, 125
Mly113I	GGCGCC	1 cut(s)	375
MnlI	CCTC	8 cut(s)	116, 235, 404, 430, 439, 479, 490, 558
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	473
MvnI	CGCG	2 cut(s)	110, 434
MwoI	GCNNNNNNNGC	1 cut(s)	440
NarI	GGCGCC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	370
NdeI	CATATG	2 cut(s)	235, 550
NdeII	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
NlaIII	CATG	4 cut(s)	167, 374, 391, 467
NlaIV	GGNNCC	2 cut(s)	376, 546
NmeAIII	GCCGAG	1 cut(s)	521
NmuCI	GTSAC	1 cut(s)	101
NruI	TCGCGA	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	458
PctI	GAATGC	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	68, 71, 442, 445
Ple19I	CGATCG	1 cut(s)	196
PluTI	GGCGCC	1 cut(s)	378
PspEI	GGTNACC	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	376, 546
PspPI	GGNCC	3 cut(s)	167, 239, 329
PvuI	CGATCG	1 cut(s)	196
RruI	TCGCGA	1 cut(s)	110
SacII	CCGCGG	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	67, 70, 441, 444
Sau3AI	GATC	7 cut(s)	88, 120, 160, 172, 193, 382, 498
Sau96I	GGNCC	3 cut(s)	167, 239, 329
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	542
SfoI	GGCGCC	1 cut(s)	376
Sfr303I	CCGCGG	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	167, 239
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	112, 125
SsiI	CCGC	8 cut(s)	66, 69, 99, 248, 343, 432, 434, 444
SspDI	GGCGCC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	370
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	4 cut(s)	87, 123, 192, 196
TasI	AATT	2 cut(s)	112, 125
TauI	GCSGC	3 cut(s)	69, 72, 446
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	39, 79
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	101
TspRI	CASTG	2 cut(s)	39, 79
VpaK11BI	GGWCC	2 cut(s)	167, 239
XapI	RAATTY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.