Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0022809

Physical Location & Seq

Genomic Coordinates Reverse (-)

12922015 .. 12922473

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATCATCAACGAAACCTTGTCGATATGTCTTTTTACCATTTCTCTCTTCCTCCTATACATATGGTCCTTCTCCGCTACCACTACTAAAATCTCACCACCTTCTCCACCAAAGCTCCCTATCATTGGAAACCTTCACCAACTTAAAGACCCTTACATTCACCGCTCACTCCAAGCCTTGTCCCAACGCCATGGCGCCCCTGATCTCACGCTCCTCCATCTTGGAAGCTTCCCGGTGGTCGTCGTGTCCTCCGCGGAGGCTGCCGCCCAGCTCTTCAAAACACATGACCTCGCATTCTCCTCCAGACCCAAGTTGACCGCCTACGGCAAGCTTCTCTACAACTACAAGGACGTGGGCTCGGAGCCATATGGCGAGTATTGGAGGCAGGTGAAGAGCATATGTGTGTTGAATCTCTTAAGCAACAAGCCAACAATAGGGTTCGCTTGTATCGCGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

152

Amino Acids

16.82

Weight (kDa)

9.2

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	33 - 141	3.2e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022809)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192091 RchiOBHm_Chr7g0197331
rosa_samantha	Rh7BG166400 Rh7DG165700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	165
AccII	CGCG	2 cut(s)	254, 452
AciI	CCGC	7 cut(s)	75, 163, 252, 254, 264, 318, 452
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	125, 434
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	277, 409
AjiI	CACGTC	1 cut(s)	352
AluBI	AGCT	4 cut(s)	115, 228, 271, 331
AluI	AGCT	4 cut(s)	115, 228, 271, 331
ApeKI	GCWGC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	87, 128, 152, 400
AvaII	GGWCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	340
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	3 cut(s)	261, 264, 453
BlsI	GCNGC	3 cut(s)	262, 265, 454
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	196, 363
BmrFI	CCNGG	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	190, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 434
BseDI	CCNNGG	2 cut(s)	190, 252
BseLI	CCNNNNNNNGG	2 cut(s)	125, 434
BseRI	GAGGAG	2 cut(s)	203, 289
BseXI	GCAGC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	2 cut(s)	254, 452
BshNI	GGYRCC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	125, 434
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	2 cut(s)	3, 202
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	7 cut(s)	75, 163, 252, 254, 264, 318, 452
BspFNI	CGCG	2 cut(s)	254, 452
BspLI	GGNNCC	2 cut(s)	196, 363
BspMI	ACCTGC	1 cut(s)	376
BspQI	GCTCTTC	2 cut(s)	278, 386
BspT107I	GGYRCC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	190, 252
BssMI	GATC	2 cut(s)	3, 202
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	190
Bst6I	CTCTTC	3 cut(s)	53, 278, 386
BstACI	GRCGYC	1 cut(s)	195
BstAFI	CTTAAG	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	329
BstDSI	CCRYGG	2 cut(s)	190, 252
BstFNI	CGCG	2 cut(s)	254, 452
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	6, 205
BstMBI	GATC	2 cut(s)	3, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 449
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	2 cut(s)	254, 452
BstV1I	GCAGC	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	191
BtgI	CCRYGG	2 cut(s)	190, 252
BtrI	CACGTC	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	255
CviAII	CATG	2 cut(s)	191, 284
CviJI	RGCY	9 cut(s)	115, 176, 228, 260, 271, 331, 357, 364, 427
CviKI_1	RGCY	9 cut(s)	115, 176, 228, 260, 271, 331, 357, 364, 427
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	2 cut(s)	5, 204
DpnII	GATC	2 cut(s)	3, 202
Eam1104I	CTCTTC	3 cut(s)	53, 278, 386
EarI	CTCTTC	3 cut(s)	53, 278, 386
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	359
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	194, 287
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	190, 283
FauNDI	CATATG	3 cut(s)	62, 367, 398
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	261, 264, 453
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	261, 264, 453
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	3 cut(s)	261, 264, 453
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	198
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	194, 287
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HindIII	AAGCTT	2 cut(s)	226, 329
HinfI	GANTC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	4 cut(s)	87, 128, 152, 400
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	79, 111, 143
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 449
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	194, 287
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	3, 202
LguI	GCTCTTC	2 cut(s)	278, 386
LmnI	GCTCC	3 cut(s)	120, 216, 361
LpnPI	CCDG	5 cut(s)	213, 246, 281, 316, 371
Lsp1109I	GCAGC	1 cut(s)	247
MaeII	ACGT	1 cut(s)	351
MalI	GATC	2 cut(s)	5, 204
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	2 cut(s)	3, 202
MboII	GAAGA	3 cut(s)	40, 265, 403
MhlI	GDGCHC	1 cut(s)	359
Mly113I	GGCGCC	1 cut(s)	195
MnlI	CCTC	7 cut(s)	62, 224, 250, 259, 299, 310, 375
MseI	TTAA	2 cut(s)	144, 416
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	2 cut(s)	254, 452
MwoI	GCNNNNNNNGC	2 cut(s)	260, 449
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	190
NdeI	CATATG	3 cut(s)	62, 367, 398
NdeII	GATC	2 cut(s)	3, 202
NlaIII	CATG	2 cut(s)	194, 287
NlaIV	GGNNCC	2 cut(s)	196, 363
PaqCI	CACCTGC	1 cut(s)	376
PciSI	GCTCTTC	2 cut(s)	278, 386
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	262, 265, 454
PluTI	GGCGCC	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	196, 363
PspPI	GGNCC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	401
SacII	CCGCGG	1 cut(s)	255
SapI	GCTCTTC	2 cut(s)	278, 386
SaqAI	TTAA	2 cut(s)	144, 416
SatI	GCNGC	3 cut(s)	261, 264, 453
Sau3AI	GATC	2 cut(s)	3, 202
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	359
SfoI	GGCGCC	1 cut(s)	196
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
SsiI	CCGC	7 cut(s)	75, 163, 252, 254, 264, 318, 452
SspDI	GGCGCC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	190
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	23
TauI	GCSGC	2 cut(s)	266, 455
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	2 cut(s)	144, 416
Tru9I	TTAA	2 cut(s)	144, 416
TseI	GCWGC	1 cut(s)	260
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.