RchiOBHm_Chr7g0197511

mitogen-activated protein kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0021467
Physical Location & Seq
Forward (+)
15433295 .. 15434165
871 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17670

Sequence Viewer

Length: 321 bp
ATGGAGTACATGGACTTGGGTTCTCTTGAAACCTTGCTCATGTCCCAAAGTCCCTTATCCGAAGAAAAGCTTGCCCCCGTCGCACGCCAAGCCCTCGATTGCTTCACAACACTCACAAGATTTTGGGACAGTATCGGTACAATGGTAGGTCACGGGTCACGTATGTCGCTGTTTAACAACATCAAGCCCGAGAATCTTTTAATGAATAGCAAGATGGAGGTCAAGATCGCTGACTTTTGTTGCAGCGAGATCATGAGCCATAATAGTATTGACAAGTCTTGCAGTTCGTACATGGGGACTTGTGCTTATATGAGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000160 GO:0000165 GO:0000187 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007568 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009700 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009755 GO:0009791 GO:0009814 GO:0009838 GO:0009862 GO:0009863 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010120 GO:0010150 GO:0010227 GO:0010229 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010817 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019887 GO:0022414 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030295 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033674 GO:0034641 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042493 GO:0042742 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043449 GO:0043450 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044272 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045087 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0046217 GO:0046483 GO:0046677 GO:0046777 GO:0048366 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0090567 GO:0090693 GO:0098542 GO:0098772 GO:0099402 GO:0140096 GO:1900673 GO:1900674 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
Pkinase

Protein Analysis

106

Amino Acids

11.85

Weight (kDa)

4.97

Isoelectric Point (pI)

77.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 106 1.2e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021467)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0197511 RchiOBHm_Chr7g0219811
rosa_multiflora Rmu_sc0002167.1_g000008 Rmu_sc0007007.1_g000010
rosa_samantha Rh7AG165400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 8, 139, 290
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 188
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 208
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 161
BseXI GCAGC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 188
BslFI GGGAC 4 cut(s) 28, 36, 140, 310
BsmFI GGGAC 4 cut(s) 28, 36, 140, 310
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 2 cut(s) 225, 249
BspHI TCATGA 1 cut(s) 252
BssMI GATC 2 cut(s) 225, 249
Bst4CI ACNGT 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 72, 85
BstKTI GATC 2 cut(s) 228, 252
BstMBI GATC 2 cut(s) 225, 249
BstMWI GCNNNNNNNGC 2 cut(s) 80, 89
BstV1I GCAGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 72, 85
CciI TCATGA 1 cut(s) 252
Csp6I GTAC 3 cut(s) 7, 138, 289
CviAII CATG 5 cut(s) 10, 40, 253, 292, 318
CviJI RGCY 4 cut(s) 70, 92, 187, 258
CviKI_1 RGCY 4 cut(s) 70, 92, 187, 258
CviQI GTAC 3 cut(s) 7, 138, 289
DpnI GATC 2 cut(s) 227, 251
DpnII GATC 2 cut(s) 225, 249
Eco88I CYCGRG 1 cut(s) 188
FaeI CATG 5 cut(s) 13, 43, 256, 295, 321
FaiI YATR 9 cut(s) 11, 41, 164, 254, 261, 293, 309, 311, 319
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 4 cut(s) 28, 36, 140, 310
FatI CATG 5 cut(s) 9, 39, 252, 291, 317
Fnu4HI GCNGC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
Hin1II CATG 5 cut(s) 13, 43, 256, 295, 321
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 193, 313
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 26, 223, 253
Hpy99I CGWCG 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 243, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 89
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 5 cut(s) 13, 43, 256, 295, 321
Kzo9I GATC 2 cut(s) 225, 249
Lsp1109I GCAGC 1 cut(s) 255
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 149, 156
MalI GATC 2 cut(s) 227, 251
MboI GATC 2 cut(s) 225, 249
MboII GAAGA 1 cut(s) 74
MnlI CCTC 2 cut(s) 104, 211
MseI TTAA 2 cut(s) 174, 200
MwoI GCNNNNNNNGC 2 cut(s) 80, 89
NdeII GATC 2 cut(s) 225, 249
NlaIII CATG 5 cut(s) 13, 43, 256, 295, 321
NmuCI GTSAC 2 cut(s) 149, 156
PagI TCATGA 1 cut(s) 252
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 245
Ppu21I YACGTR 1 cut(s) 161
RsaI GTAC 3 cut(s) 8, 139, 290
RsaNI GTAC 3 cut(s) 7, 138, 289
SaqAI TTAA 2 cut(s) 174, 200
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 225, 249
SetI ASST 5 cut(s) 35, 72, 151, 163, 222
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 96
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 174, 200
Tru9I TTAA 2 cut(s) 174, 200
TseFI GTSAC 2 cut(s) 149, 156
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 2 cut(s) 149, 156
TspDTI ATGAA 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.