Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007007.1

Orthogroup ID

OG0021467

Physical Location & Seq

Genomic Coordinates Reverse (-)

63528 .. 65392

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007007.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggacattagaggacttcaaactatgctattcattattgtcaatggaatttggttaagagatctacaaacgcagctgtggattgaattgctagtcgagctaaaagagggatggatcttggtaattgggtatttgcaccctccatcctctctggtcaatgtgctgaagagtgatgtatggctcttgtccaagaactccgcaagatcaataatctccttctccccttgtctttacccttcatctccgtccacaaccgcccacttctctctcttcaaaccattcctcgccccgctggcaccaccaccaccttcatctcctcctctaccacacctgcttcggcctcagacctcgagtgactccaaatcatgggccacggaagcggtggcaccgtctacaaagtttttcacaagcccatttccaccacttacgctctcaaacaactcaagccagttgctgactcctcctcaaataacaacagacttcacagtgaactcgacatccacggccggctctccctccgttgtccactgccacaccatctttgagaagccctccggagacgtgtcggttctcatggagtacatggacttgggttctcttgaaaccttgctcatgtcccaaagtcccttatccgaagaaaagcttgcccccgtcgcacgccaagccctcgattgcttcacaacactcacaagattgttcgccgcgacatctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0000165 GO:0000187 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007568 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009700 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009755 GO:0009791 GO:0009814 GO:0009838 GO:0009862 GO:0009863 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010120 GO:0010150 GO:0010227 GO:0010229 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010817 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019887 GO:0022414 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030295 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033674 GO:0034641 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042493 GO:0042742 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043449 GO:0043450 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044272 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045087 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0046217 GO:0046483 GO:0046677 GO:0046777 GO:0048366 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0090567 GO:0090693 GO:0098542 GO:0098772 GO:0099402 GO:0140096 GO:1900673 GO:1900674 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

238

Amino Acids

26.04

Weight (kDa)

5.92

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197511 RchiOBHm_Chr7g0219811
rosa_multiflora	Rmu_sc0002167.1_g000008 Rmu_sc0007007.1_g000010
rosa_samantha	Rh7AG165400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	339
AccB1I	GGYRCC	2 cut(s)	295, 385
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	392
AccII	CGCG	1 cut(s)	704
AccIII	TCCGGA	1 cut(s)	554
AciI	CCGC	5 cut(s)	198, 255, 290, 380, 702
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	366
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	20, 86, 274, 602
AjiI	CACGTC	1 cut(s)	562
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	76, 100, 643
AluI	AGCT	3 cut(s)	76, 100, 643
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	554
AoxI	GGCC	3 cut(s)	338, 369, 504
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	349
BanI	GGYRCC	2 cut(s)	295, 385
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	105, 151, 545
BceAI	ACGGC	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	2 cut(s)	74, 702
BlsI	GCNGC	2 cut(s)	75, 703
BmeT110I	CYCGRG	1 cut(s)	349
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	297, 387
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpuEI	CTTGAG	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	372, 501
BsaWI	WCCGGW	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	448
BseAI	TCCGGA	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	372, 501
BseGI	GGATG	3 cut(s)	116, 143, 497
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	4 cut(s)	306, 309, 450, 453
BseX3I	CGGCCG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	704
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	340, 371, 506
BshNI	GGYRCC	2 cut(s)	295, 385
BsiEI	CGRYCG	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	507, 555
BslFI	GGGAC	2 cut(s)	601, 609
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	552
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	2 cut(s)	601, 609
BsnI	GGCC	3 cut(s)	340, 371, 506
BsoBI	CYCGRG	1 cut(s)	349
Bsp13I	TCCGGA	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	61, 114, 203
BspACI	CCGC	5 cut(s)	198, 255, 290, 380, 702
BspANI	GGCC	3 cut(s)	340, 371, 506
BspCNI	CTCAG	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	704
BspLI	GGNNCC	2 cut(s)	297, 387
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	2 cut(s)	295, 385
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	372, 501
BssMI	GATC	3 cut(s)	61, 114, 203
Bst4CI	ACNGT	2 cut(s)	390, 487
Bst6I	CTCTTC	2 cut(s)	161, 275
BstC8I	GCNNGC	4 cut(s)	294, 508, 645, 658
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	2 cut(s)	372, 501
BstF5I	GGATG	3 cut(s)	116, 143, 497
BstFNI	CGCG	1 cut(s)	704
BstKTI	GATC	3 cut(s)	64, 117, 206
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	3 cut(s)	61, 114, 203
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 293, 377, 653, 662
BstUI	CGCG	1 cut(s)	704
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	2 cut(s)	61, 114
BstYI	RGATCY	2 cut(s)	61, 114
BstZI	CGGCCG	1 cut(s)	504
BsuRI	GGCC	3 cut(s)	340, 371, 506
BtgI	CCRYGG	2 cut(s)	372, 501
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	116, 143, 497
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	492, 526
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	4 cut(s)	294, 508, 645, 658
CaiI	CAGNNNCTG	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	4 cut(s)	366, 574, 583, 613
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	63, 116, 205
DpnII	GATC	3 cut(s)	61, 114, 203
EaeI	YGGCCR	1 cut(s)	504
EagI	CGGCCG	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	161, 275
EarI	CTCTTC	2 cut(s)	161, 275
EclXI	CGGCCG	1 cut(s)	504
Eco52I	CGGCCG	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	4 cut(s)	369, 577, 586, 616
FaiI	YATR	6 cut(s)	26, 178, 367, 575, 584, 614
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	2 cut(s)	601, 609
FatI	CATG	4 cut(s)	365, 573, 582, 612
FauI	CCCGC	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	2 cut(s)	74, 702
FokI	GGATG	3 cut(s)	123, 130, 484
Fsp4HI	GCNGC	2 cut(s)	74, 702
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	74, 702
HaeIII	GGCC	3 cut(s)	340, 371, 506
HapII	CCGG	2 cut(s)	507, 555
Hin1II	CATG	4 cut(s)	369, 577, 586, 616
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	2 cut(s)	356, 457
HpaII	CCGG	2 cut(s)	507, 555
Hpy166II	GTNNAC	4 cut(s)	249, 393, 490, 526
Hpy188I	TCNGA	2 cut(s)	345, 634
Hpy188III	TCNNGA	2 cut(s)	555, 599
Hpy8I	GTNNAC	4 cut(s)	249, 393, 490, 526
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	3 cut(s)	226, 246, 318
HpyCH4III	ACNGT	2 cut(s)	390, 487
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 293, 377, 653, 662
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	4 cut(s)	369, 577, 586, 616
Kpn2I	TCCGGA	1 cut(s)	554
KroI	GCCGGC	1 cut(s)	506
KroNI	GCCGGC	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	61, 114, 203
LpnPI	CCDG	6 cut(s)	137, 278, 344, 461, 520, 568
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	3 cut(s)	63, 116, 205
MboI	GATC	3 cut(s)	61, 114, 203
MboII	GAAGA	3 cut(s)	178, 262, 647
MflI	RGATCY	2 cut(s)	61, 114
MluCI	AATT	3 cut(s)	48, 86, 123
MlyI	GAGTC	2 cut(s)	350, 451
MroI	TCCGGA	1 cut(s)	554
MroNI	GCCGGC	1 cut(s)	506
MseI	TTAA	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	76, 292
MspI	CCGG	2 cut(s)	507, 555
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	5 cut(s)	97, 293, 377, 653, 662
NaeI	GCCGGC	1 cut(s)	508
NdeII	GATC	3 cut(s)	61, 114, 203
NgoMIV	GCCGGC	1 cut(s)	506
NlaIII	CATG	4 cut(s)	369, 577, 586, 616
NlaIV	GGNNCC	2 cut(s)	297, 387
NmuCI	GTSAC	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	508
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	75, 703
PleI	GAGTC	2 cut(s)	350, 451
PpsI	GAGTC	2 cut(s)	350, 451
PspN4I	GGNNCC	2 cut(s)	297, 387
PspPI	GGNCC	1 cut(s)	369
PspXI	VCTCGAGB	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	61, 114
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	74, 702
Sau3AI	GATC	3 cut(s)	61, 114, 203
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	2 cut(s)	350, 451
SetI	ASST	8 cut(s)	78, 102, 310, 333, 350, 564, 608, 645
Sfr274I	CTCGAG	1 cut(s)	349
SlaI	CTCGAG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	349, 442
SmoI	CTYRAG	2 cut(s)	349, 442
Sse9I	AATT	3 cut(s)	48, 86, 123
SsiI	CCGC	5 cut(s)	198, 255, 290, 380, 702
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	390, 487
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	96, 350, 494, 669
TasI	AATT	3 cut(s)	48, 86, 123
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	704
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	492, 533
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	22, 228, 300
TspGWI	ACGGA	3 cut(s)	234, 389, 508
TspRI	CASTG	2 cut(s)	492, 533
Van91I	CCANNNNNTGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XhoI	CTCGAG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.