Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002167.1

Orthogroup ID

OG0021467

Physical Location & Seq

Genomic Coordinates Forward (+)

33624 .. 34097

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002167.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ctgtccaccaccgcccacttctctctcttcaaaccattcctcgccccgctggcaccaccaccaccttcatctcctcctctaccacacctgcttcggcctcagacctcgagtgactccaaatcatgggccacggaagcggtggcaccgtctacaaagtttttcacaagcccatttccactacttacgctctcaaacaacttaagccagttgctgactcctcctcccataacaacagacttcacagtgaactcaacatccacggccggctctccctccgttgtccactgccacaccatctttgagaagccctccggagacgtgtcggttctcatggagtacatggacttgggttctcttgaaaccttgctcatgtcccaaagtcccttatccgaagaaaagcttgcccccgtcgcacgccaagccctcgattgcttcacaacactcacaagattgttcgccgcggcatctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0000165 GO:0000187 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007568 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009700 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009755 GO:0009791 GO:0009814 GO:0009838 GO:0009862 GO:0009863 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010120 GO:0010150 GO:0010227 GO:0010229 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010817 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019887 GO:0022414 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030295 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033674 GO:0034641 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042493 GO:0042742 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043449 GO:0043450 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044272 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045087 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0046217 GO:0046483 GO:0046677 GO:0046777 GO:0048366 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0090567 GO:0090693 GO:0098542 GO:0098772 GO:0099402 GO:0140096 GO:1900673 GO:1900674 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

157

Amino Acids

16.78

Weight (kDa)

5.71

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197511 RchiOBHm_Chr7g0219811
rosa_multiflora	Rmu_sc0002167.1_g000008 Rmu_sc0007007.1_g000010
rosa_samantha	Rh7AG165400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	2 cut(s)	52, 142
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	149
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	5 cut(s)	12, 47, 137, 459, 461
AcoI	YGGCCR	1 cut(s)	261
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	31, 359
AjiI	CACGTC	1 cut(s)	319
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	3 cut(s)	95, 126, 261
AspS9I	GGNCC	1 cut(s)	126
AvaI	CYCGRG	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	52, 142
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	309
BfrI	CTTAAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	459, 462
BlsI	GCNGC	2 cut(s)	460, 463
BmeT110I	CYCGRG	1 cut(s)	106
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	54, 144
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BsaJI	CCNNGG	3 cut(s)	129, 258, 459
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	129, 258, 459
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	4 cut(s)	63, 66, 207, 210
BseX3I	CGGCCG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	97, 128, 263
BshNI	GGYRCC	2 cut(s)	52, 142
BsiEI	CGRYCG	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	264, 312
BslFI	GGGAC	2 cut(s)	358, 366
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	309
BsmBI	CGTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	358, 366
BsnI	GGCC	3 cut(s)	97, 128, 263
BsoBI	CYCGRG	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	311
BspACI	CCGC	5 cut(s)	12, 47, 137, 459, 461
BspANI	GGCC	3 cut(s)	97, 128, 263
BspCNI	CTCAG	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	2 cut(s)	54, 144
BspMI	ACCTGC	1 cut(s)	96
BspT107I	GGYRCC	2 cut(s)	52, 142
BspTI	CTTAAG	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	129, 258, 459
Bst4CI	ACNGT	2 cut(s)	147, 244
Bst6I	CTCTTC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	199
BstC8I	GCNNGC	4 cut(s)	51, 265, 402, 415
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	3 cut(s)	129, 258, 459
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	461
BstMAI	GTCTC	1 cut(s)	309
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 134, 410, 419
BstUI	CGCG	1 cut(s)	461
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	97, 128, 263
BtgI	CCRYGG	3 cut(s)	129, 258, 459
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	249, 283
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	4 cut(s)	51, 265, 402, 415
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	126
Cfr42I	CCGCGG	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	4 cut(s)	123, 331, 340, 370
CviJI	RGCY	9 cut(s)	97, 128, 168, 204, 263, 267, 307, 400, 422
CviKI_1	RGCY	9 cut(s)	97, 128, 168, 204, 263, 267, 307, 400, 422
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EclXI	CGGCCG	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	4 cut(s)	126, 334, 343, 373
FaiI	YATR	5 cut(s)	124, 227, 332, 341, 371
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	2 cut(s)	358, 366
FatI	CATG	4 cut(s)	122, 330, 339, 369
FauI	CCCGC	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	459, 462
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	459, 462
GluI	GCNGC	2 cut(s)	459, 462
HaeIII	GGCC	3 cut(s)	97, 128, 263
HapII	CCGG	2 cut(s)	264, 312
Hin1II	CATG	4 cut(s)	126, 334, 343, 373
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	113, 214
HpaII	CCGG	2 cut(s)	264, 312
Hpy166II	GTNNAC	4 cut(s)	6, 150, 247, 283
Hpy188I	TCNGA	2 cut(s)	102, 391
Hpy188III	TCNNGA	2 cut(s)	312, 356
Hpy8I	GTNNAC	4 cut(s)	6, 150, 247, 283
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	147, 244
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 134, 410, 419
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	126, 334, 343, 373
Kpn2I	TCCGGA	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	462
LpnPI	CCDG	5 cut(s)	35, 101, 218, 277, 325
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	2 cut(s)	19, 404
MlyI	GAGTC	2 cut(s)	107, 208
MroI	TCCGGA	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	49, 461
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	2 cut(s)	264, 312
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	4 cut(s)	50, 134, 410, 419
NaeI	GCCGGC	1 cut(s)	265
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	4 cut(s)	126, 334, 343, 373
NlaIV	GGNNCC	2 cut(s)	54, 144
NmuCI	GTSAC	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	460, 463
PleI	GAGTC	2 cut(s)	107, 208
PpsI	GAGTC	2 cut(s)	107, 208
PspN4I	GGNNCC	2 cut(s)	54, 144
PspPI	GGNCC	1 cut(s)	126
PspXI	VCTCGAGB	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacII	CCGCGG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	2 cut(s)	459, 462
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	2 cut(s)	107, 208
SetI	ASST	6 cut(s)	67, 90, 107, 321, 365, 402
Sfr274I	CTCGAG	1 cut(s)	106
Sfr303I	CCGCGG	1 cut(s)	462
SgrBI	CCGCGG	1 cut(s)	462
SlaI	CTCGAG	1 cut(s)	106
SmlI	CTYRAG	2 cut(s)	106, 199
SmoI	CTYRAG	2 cut(s)	106, 199
SsiI	CCGC	5 cut(s)	12, 47, 137, 459, 461
TaaI	ACNGT	2 cut(s)	147, 244
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	107, 426
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	2 cut(s)	461, 464
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	2 cut(s)	249, 290
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	2 cut(s)	146, 265
TspRI	CASTG	2 cut(s)	249, 290
Van91I	CCANNNNNTGG	1 cut(s)	123
Vha464I	CTTAAG	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.