Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022807

Physical Location & Seq

Genomic Coordinates Forward (+)

16385606 .. 16386399

Gene Structure 794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17759

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCAAACTGGGAACGAGAAAAGGATAATCCTAACCACTAACCATTACCCACCACTCCAGCACCGCGCAACCTCCATTGAAATGACGTCGTTTCTGCACTTGCCAGCAACTTCCTTTCTTCCTTCTTCTCTCCGCGGAGCTTCCCTCACAGCTCGGCCCAATCCCAGCTCGCTCTGTCCGACCCGGTTGAGTGTTAAATGCAGGCATGCACAGGCTAGTGTAAAGAGCGAGGATTTTAATTCTGGCGCCATAGACGTTGCGGCTGACGTTAGGCTTGAACGGGTAAGCACAAATTCACAGACCTTATCCCGTCTGGAATCGAATTACTACTCGATCAGAGACGACCTCGGACCTACTGGACTTACTCGACGATTCCGATCTCATTCCAGCGCTCGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

133

Amino Acids

14.7

Weight (kDa)

10.26

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022807)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0198491
rosa_roxburghii	Rroxscaffold_3G00257660
rosa_samantha	Rh7BG174900 Rh7BG175100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	2 cut(s)	66, 135
AciI	CCGC	4 cut(s)	64, 133, 135, 260
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	2 cut(s)	86, 246
AfeI	AGCGCT	1 cut(s)	391
AgsI	TTSAA	2 cut(s)	80, 278
AluBI	AGCT	3 cut(s)	140, 152, 168
AluI	AGCT	3 cut(s)	140, 152, 168
Alw26I	GTCTC	1 cut(s)	333
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	3 cut(s)	68, 248, 392
AspS9I	GGNCC	2 cut(s)	156, 350
AsuC2I	CCSGG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	2 cut(s)	249, 393
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	156, 350
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	184
BmrI	ACTGGG	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	18
BplI	GAGNNNNNCTC	4 cut(s)	129, 161, 330, 362
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	376
BsaHI	GRCGYC	2 cut(s)	86, 246
BsaJI	CCNNGG	2 cut(s)	133, 346
Bse1I	ACTGG	2 cut(s)	13, 361
Bse8I	GATNNNNATC	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	133, 346
BseJI	GATNNNNATC	1 cut(s)	376
BseNI	ACTGG	2 cut(s)	13, 361
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	2 cut(s)	66, 135
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	333
BsmBI	CGTCTC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	333, 377
BspACI	CCGC	4 cut(s)	64, 133, 135, 260
BspANI	GGCC	1 cut(s)	157
BspFNI	CGCG	2 cut(s)	66, 135
BspHI	TCATGA	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	13, 361
BssECI	CCNNGG	2 cut(s)	133, 346
BssMI	GATC	2 cut(s)	333, 377
BssNI	GRCGYC	2 cut(s)	86, 246
BstACI	GRCGYC	2 cut(s)	86, 246
BstC8I	GCNNGC	4 cut(s)	105, 170, 203, 207
BstDSI	CCRYGG	1 cut(s)	133
BstFNI	CGCG	2 cut(s)	66, 135
BstH2I	RGCGCY	2 cut(s)	249, 393
BstHHI	GCGC	3 cut(s)	68, 248, 392
BstKTI	GATC	2 cut(s)	336, 380
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	2 cut(s)	333, 377
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	2 cut(s)	66, 135
BsuRI	GGCC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	133
Cac8I	GCNNGC	4 cut(s)	105, 170, 203, 207
CciI	TCATGA	1 cut(s)	398
CfoI	GCGC	3 cut(s)	68, 248, 392
Cfr13I	GGNCC	2 cut(s)	156, 350
Cfr42I	CCGCGG	1 cut(s)	136
CviAII	CATG	2 cut(s)	206, 399
CviJI	RGCY	7 cut(s)	140, 152, 157, 168, 215, 263, 274
CviKI_1	RGCY	7 cut(s)	140, 152, 157, 168, 215, 263, 274
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	2 cut(s)	335, 379
DpnII	GATC	2 cut(s)	333, 377
Eco47I	GGWCC	1 cut(s)	350
Eco47III	AGCGCT	1 cut(s)	391
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	2 cut(s)	209, 402
FaiI	YATR	3 cut(s)	207, 251, 400
FatI	CATG	2 cut(s)	205, 398
Fnu4HI	GCNGC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	3 cut(s)	67, 247, 391
GluI	GCNGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	2 cut(s)	249, 393
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	3 cut(s)	68, 248, 392
Hin1I	GRCGYC	2 cut(s)	86, 246
Hin1II	CATG	2 cut(s)	209, 402
Hin6I	GCGC	3 cut(s)	66, 246, 390
HinP1I	GCGC	3 cut(s)	66, 246, 390
HinfI	GANTC	2 cut(s)	317, 372
HpaII	CCGG	1 cut(s)	184
Hpy188I	TCNGA	4 cut(s)	180, 338, 350, 377
Hpy188III	TCNNGA	2 cut(s)	314, 399
Hpy99I	CGWCG	2 cut(s)	91, 372
HpyAV	CCTTC	1 cut(s)	132
HpyCH4IV	ACGT	3 cut(s)	86, 255, 267
HpyCH4V	TGCA	4 cut(s)	4, 97, 201, 209
HpySE526I	ACGT	3 cut(s)	86, 255, 267
Hsp92I	GRCGYC	2 cut(s)	86, 246
Hsp92II	CATG	2 cut(s)	209, 402
HspAI	GCGC	3 cut(s)	66, 246, 390
KasI	GGCGCC	1 cut(s)	245
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	333, 377
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	9 cut(s)	71, 117, 178, 187, 197, 197, 228, 299, 342
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	3 cut(s)	86, 255, 267
MalI	GATC	2 cut(s)	335, 379
MboI	GATC	2 cut(s)	333, 377
MboII	GAAGA	2 cut(s)	110, 117
MluCI	AATT	3 cut(s)	238, 292, 322
Mly113I	GGCGCC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	4 cut(s)	82, 155, 223, 356
MseI	TTAA	2 cut(s)	195, 237
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	66, 135
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	333, 377
NlaIII	CATG	2 cut(s)	209, 402
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	133
NspI	RCATGY	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	209
PagI	TCATGA	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	176, 373
PfeI	GAWTC	2 cut(s)	317, 372
PkrI	GCNGC	1 cut(s)	262
PluTI	GGCGCC	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	156, 350
RseI	CAYNNNNRTG	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	195, 237
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	333, 377
Sau96I	GGNCC	2 cut(s)	156, 350
ScrFI	CCNGG	1 cut(s)	184
SfoI	GGCGCC	1 cut(s)	247
Sfr303I	CCGCGG	1 cut(s)	136
SgrBI	CCGCGG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	238, 292, 322
SsiI	CCGC	4 cut(s)	64, 133, 135, 260
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	182
TaiI	ACGT	3 cut(s)	89, 258, 270
TaqI	TCGA	3 cut(s)	320, 332, 367
TasI	AATT	3 cut(s)	238, 292, 322
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	317, 372
Tru1I	TTAA	2 cut(s)	195, 237
Tru9I	TTAA	2 cut(s)	195, 237
TspDTI	ATGAA	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.