Rroxscaffold_3G00257660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0022807
Physical Location & Seq
Reverse (-)
51976822 .. 51981473
4652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257660.1

Sequence Viewer

Length: 315 bp
ATGAAAGGTTCACTTACATATTCAGTTTCACGAGGTCCTTGGAGAGGTCATTGGAGATCTCGCAAAAACTTTAGGAGATTTATCGACTCTCATGCAAAGGCTAGTGTAAAGAGCGAGGATTTTACTTCTGGCGCCATAGACGTTGTGGGTGATGTTAGGCTTGAACGGGTAAGCACATACTCACAGACCTTATCCCGTCTGGAATCGAATTACTACTCAGAGACGACCTACTGGACTTACTCGACGATTCCGATCTCATTCCAGCGCTCGTTCATGAAGAGCTTCGAGGAAGAGATTTCCGGCGATGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.05

Weight (kDa)

9.0

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022807)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0198491
rosa_roxburghii Rroxscaffold_3G00257660
rosa_samantha Rh7BG174900 Rh7BG175100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 2 cut(s) 134, 267
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 30
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 2 cut(s) 135, 268
BglII AGATCT 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 56, 252
BspCNI CTCAG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 56, 252
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 272, 285
BstACI GRCGYC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 42
BstH2I RGCGCY 2 cut(s) 135, 268
BstHHI GCGC 2 cut(s) 134, 267
BstKTI GATC 2 cut(s) 59, 255
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 56, 252
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
CciI TCATGA 1 cut(s) 273
CfoI GCGC 2 cut(s) 134, 267
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 2 cut(s) 92, 274
CviJI RGCY 3 cut(s) 101, 160, 282
CviKI_1 RGCY 3 cut(s) 101, 160, 282
DdeI CTNAG 1 cut(s) 217
DinI GGCGCC 1 cut(s) 133
DpnI GATC 2 cut(s) 58, 254
DpnII GATC 2 cut(s) 56, 252
Eam1104I CTCTTC 2 cut(s) 272, 285
EarI CTCTTC 2 cut(s) 272, 285
Eco130I CCWWGG 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 35
Eco47III AGCGCT 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 38
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 2 cut(s) 95, 277
FaiI YATR 5 cut(s) 19, 93, 137, 178, 275
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 2 cut(s) 91, 273
FspBI CTAG 1 cut(s) 102
GlaI GCGC 2 cut(s) 133, 266
HaeII RGCGCY 2 cut(s) 135, 268
HapII CCGG 1 cut(s) 300
HhaI GCGC 2 cut(s) 134, 267
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 95, 277
Hin6I GCGC 2 cut(s) 132, 265
HinP1I GCGC 2 cut(s) 132, 265
HinfI GANTC 3 cut(s) 86, 203, 247
HpaII CCGG 1 cut(s) 300
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 220, 252
Hpy188III TCNNGA 3 cut(s) 30, 200, 274
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 95, 277
HspAI GCGC 2 cut(s) 132, 265
KasI GGCGCC 1 cut(s) 131
Kzo9I GATC 2 cut(s) 56, 252
LguI GCTCTTC 1 cut(s) 272
LpnPI CCDG 4 cut(s) 114, 185, 217, 275
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 58, 254
MboI GATC 2 cut(s) 56, 252
MboII GAAGA 2 cut(s) 289, 302
MflI RGATCY 1 cut(s) 56
MluCI AATT 1 cut(s) 208
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 26, 38, 109, 280
MroXI GAANNNNTTC 1 cut(s) 281
MspI CCGG 1 cut(s) 300
NarI GGCGCC 1 cut(s) 132
NdeII GATC 2 cut(s) 56, 252
NlaIII CATG 2 cut(s) 95, 277
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 308
PagI TCATGA 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 203, 247
PleI GAGTC 1 cut(s) 80
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 35
PspPPI RGGWCCY 1 cut(s) 35
PsuI RGATCY 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 272
Sau3AI GATC 2 cut(s) 56, 252
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 80
SetI ASST 7 cut(s) 10, 37, 49, 144, 191, 230, 284
SfoI GGCGCC 1 cut(s) 133
SinI GGWCC 1 cut(s) 35
Sse9I AATT 1 cut(s) 208
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 38
TaiI ACGT 1 cut(s) 144
TaqI TCGA 4 cut(s) 84, 206, 242, 285
TasI AATT 1 cut(s) 208
TfiI GAWTC 2 cut(s) 203, 247
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 17, 262, 290
VpaK11BI GGWCC 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.