Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0022807

Physical Location & Seq

Genomic Coordinates Forward (+)

13704515 .. 13705009

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG174900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATCCGAACCACTAACCATTACCCACCACTCCAGCACCGCGCAACCTCCATTGAAATGACGTCGTTTCTGCACTTGCCAGCAACTTCCTTTCTTCCTTCTTCTCTCCGCGGAGCTTCCCTCACAGCTCGGCCCAATCCCAGCTCGCTCTGTCCGACCCGGCATGCAGAGGCTAGTGAAAAGAGCGAGGATTTTAATTCTGGCGCCATAGATGTTGTGGCTGATGTTAGGCTTGAACGGGTAAGCACAAACTCACAGACCTTATCCCGTCTGGAATCGAATTACTACTCAGAGACGACCTACTGGACTTACTCGACAATTCCGATCTCATCCCAGCGCTCGTTCATGAAGAGCTTCGAGGAAGAGATTTCCGGCGATGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

5.52

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022807)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0198491
rosa_roxburghii	Rroxscaffold_3G00257660
rosa_samantha	Rh7BG174900 Rh7BG175100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	2 cut(s)	42, 111
AciI	CCGC	3 cut(s)	40, 109, 111
AcyI	GRCGYC	2 cut(s)	62, 204
AfeI	AGCGCT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	56, 236
AluBI	AGCT	4 cut(s)	116, 128, 144, 354
AluI	AGCT	4 cut(s)	116, 128, 144, 354
Alw26I	GTCTC	1 cut(s)	287
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	3 cut(s)	44, 206, 339
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	203
BccI	CCATC	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	174
BfoI	RGCGCY	2 cut(s)	207, 340
Bme1390I	CCNGG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	160
BsaHI	GRCGYC	2 cut(s)	62, 204
BsaJI	CCNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	308
BseYI	CCCAGC	2 cut(s)	140, 333
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	2 cut(s)	42, 111
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	160, 372
BsmAI	GTCTC	1 cut(s)	287
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	3, 324
BspACI	CCGC	3 cut(s)	40, 109, 111
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	302
BspFNI	CGCG	2 cut(s)	42, 111
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	3, 324
BssNI	GRCGYC	2 cut(s)	62, 204
Bst6I	CTCTTC	2 cut(s)	344, 357
BstACI	GRCGYC	2 cut(s)	62, 204
BstC8I	GCNNGC	3 cut(s)	81, 146, 165
BstDEI	CTNAG	1 cut(s)	289
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	329
BstFNI	CGCG	2 cut(s)	42, 111
BstH2I	RGCGCY	2 cut(s)	207, 340
BstHHI	GCGC	3 cut(s)	44, 206, 339
BstKTI	GATC	2 cut(s)	6, 327
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	3, 324
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	2 cut(s)	42, 111
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	329
Cac8I	GCNNGC	3 cut(s)	81, 146, 165
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	3 cut(s)	44, 206, 339
Cfr13I	GGNCC	1 cut(s)	132
Cfr42I	CCGCGG	1 cut(s)	112
CviAII	CATG	2 cut(s)	164, 346
CviJI	RGCY	8 cut(s)	116, 128, 133, 144, 173, 221, 232, 354
CviKI_1	RGCY	8 cut(s)	116, 128, 133, 144, 173, 221, 232, 354
DdeI	CTNAG	1 cut(s)	289
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	2 cut(s)	5, 326
DpnII	GATC	2 cut(s)	3, 324
Eam1104I	CTCTTC	2 cut(s)	344, 357
EarI	CTCTTC	2 cut(s)	344, 357
Eco47III	AGCGCT	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	167, 349
FaiI	YATR	3 cut(s)	165, 209, 347
FatI	CATG	2 cut(s)	163, 345
FokI	GGATG	1 cut(s)	316
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	3 cut(s)	43, 205, 338
GsaI	CCCAGC	2 cut(s)	144, 337
GsuI	CTGGAG	1 cut(s)	17
HaeII	RGCGCY	2 cut(s)	207, 340
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	2 cut(s)	160, 372
HhaI	GCGC	3 cut(s)	44, 206, 339
Hin1I	GRCGYC	2 cut(s)	62, 204
Hin1II	CATG	2 cut(s)	167, 349
Hin6I	GCGC	3 cut(s)	42, 204, 337
HinP1I	GCGC	3 cut(s)	42, 204, 337
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	160, 372
Hpy188I	TCNGA	4 cut(s)	8, 156, 292, 324
Hpy188III	TCNNGA	2 cut(s)	272, 346
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	73, 167
HpyF3I	CTNAG	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	2 cut(s)	62, 204
Hsp92II	CATG	2 cut(s)	167, 349
HspAI	GCGC	3 cut(s)	42, 204, 337
KasI	GGCGCC	1 cut(s)	203
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	3, 324
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	8 cut(s)	47, 93, 154, 173, 186, 257, 289, 347
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	5, 326
MboI	GATC	2 cut(s)	3, 324
MboII	GAAGA	4 cut(s)	86, 93, 361, 374
MluCI	AATT	3 cut(s)	196, 280, 318
Mly113I	GGCGCC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	58, 131, 163, 181, 352
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	160, 372
MspR9I	CCNGG	1 cut(s)	160
MvnI	CGCG	2 cut(s)	42, 111
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	2 cut(s)	3, 324
NlaIII	CATG	2 cut(s)	167, 349
NlaIV	GGNNCC	1 cut(s)	205
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	380
NspI	RCATGY	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 320
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	275
PluTI	GGCGCC	1 cut(s)	207
PspFI	CCCAGC	2 cut(s)	140, 333
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	56
SacII	CCGCGG	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	3, 324
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	8 cut(s)	50, 65, 118, 130, 146, 263, 302, 356
SfoI	GGCGCC	1 cut(s)	205
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	196, 280, 318
SsiI	CCGC	3 cut(s)	40, 109, 111
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	158
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	278, 314, 357
TasI	AATT	3 cut(s)	196, 280, 318
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	334, 362
XceI	RCATGY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	174
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.