RchiOBHm_Chr7g0201441
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0022574
Physical Location & Seq
Reverse (-)
19018880 .. 19020008
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18031

Sequence Viewer

Length: 939 bp
ATGAACCCCTTCAACACTGTTTTTGATGCAAAGCGCTTGACTGGAAGAAGATTTAGTGATGTAAATGTAAAAAATGACATGAAATTATGGCATTTCAAGTTTGCCGCTGAGGAGATATCTGCAATGGTTCTCAATAAGATACGTGAAATAGCAGAGGCCTACATCGGATCGACGGTAAAGAATGTCGTTATCACTGTCCCAGCATACTTTAATGACTTACAACGTCAAGCCACAAAGAACACCGGTGTAATTGCAGGAATGAATGTTATTCGTATTATCAACGAGCCAACAGTTGCAGCCATGGCCTACGGTCTTGATAGAAAAGGCACCAATATTGCTGGAAAAAACGTTCTTATTTTTTATCATGGTGGTGGTACTTTCGATGTTTCCCTTCTTAAAATTGAAGAAGGTATTTTTGAAGTGAAAGCTACAGCTAGTGATACTCATCTTGGGGGTGAAGATTTTGATAATAGAATGGTGAACTATTTTGTACAAAAGTTCCGAAAGAAGTACGAAAAGGACATTAGTAATAACCCCAAAGCACTAAGGAGATTGAGAACATCTTGTGAGAGAGAAAAGAGAACTCTTTCTTCCACTATGCAAACCTGCATTGAGATTGAATCTTTATTCGAAGGTAATGACTTTCACTCGACAATAATGAGAGCAAAATTTGAAGAGATCAACTTGGATCTATTTATCAAATGTATGGAGCATGTGAAGCAATGTTTGAGAGATACTAAGATGGACAAGAGCATTGTTCATGATGTTGTTCTTGTTGGTGGGTCTACAAGAATTCCCAAGGTACAACAGCTATTGCAAGACTTATTTGATGGCAAGGAGCTTTGCAAAAGTATCAATCTGGATGAAGCAGTTGCATATAGTGCCTCTATACAAGCTGTAATTTTGAACGGTGAAGAAAAATATCGAGAAGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

312

Amino Acids

35.34

Weight (kDa)

8.45

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 309 2.8e-118 Hsp70 protein
MreB_Mbl PF06723 10 - 276 1.9e-14 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022574)

Species Orthologous Gene IDs
pyrus_communis pycom17g22930
rosa_chinensis RchiOBHm_Chr7g0201441
rosa_multiflora Rmu_ssc0000250.1_g000022
rosa_rugosa Rorug07G0107700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 785
AciI CCGC 1 cut(s) 105
AclI AACGTT 1 cut(s) 348
AclWI GGATC 2 cut(s) 175, 696
AcsI RAATTY 2 cut(s) 668, 792
AfaI GTAC 4 cut(s) 376, 492, 512, 804
AfeI AGCGCT 1 cut(s) 35
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 7 cut(s) 13, 97, 404, 419, 620, 674, 907
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 5 cut(s) 428, 434, 811, 841, 896
AluI AGCT 5 cut(s) 428, 434, 811, 841, 896
AlwI GGATC 2 cut(s) 175, 696
Aor51HI AGCGCT 1 cut(s) 35
AoxI GGCC 2 cut(s) 156, 303
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 2 cut(s) 668, 792
AsiGI ACCGGT 1 cut(s) 242
Asp700I GAANNNNTTC 2 cut(s) 8, 586
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 467, 490, 923
AsuII TTCGAA 1 cut(s) 630
BanI GGYRCC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 308
BccI CCATC 2 cut(s) 736, 824
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 614
BisI GCNGC 2 cut(s) 105, 297
BlsI GCNGC 2 cut(s) 106, 298
BmiI GGNNCC 1 cut(s) 328
BmsI GCATC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 300, 798
BsaWI WCCGGW 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 2 cut(s) 129, 728
Bse8I GATNNNNATC 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 300, 798
BseGI GGATG 1 cut(s) 868
BseJI GATNNNNATC 1 cut(s) 444
BseMI GCAATG 2 cut(s) 129, 728
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 158, 305
BshNI GGYRCC 1 cut(s) 326
BshTI ACCGGT 1 cut(s) 242
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 158, 305
Bsp119I TTCGAA 1 cut(s) 630
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 3 cut(s) 167, 678, 688
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 158, 305
BspCNI CTCAG 1 cut(s) 100
BspHI TCATGA 2 cut(s) 760, 935
BspLI GGNNCC 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 614
BspPI GGATC 2 cut(s) 175, 696
BspT104I TTCGAA 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 129, 728
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 300, 798
BssMI GATC 3 cut(s) 167, 678, 688
BssT1I CCWWGG 2 cut(s) 300, 798
Bst4CI ACNGT 6 cut(s) 19, 175, 196, 292, 311, 911
Bst6I CTCTTC 1 cut(s) 669
BstAPI GCANNNNNTGC 1 cut(s) 881
BstAUI TGTACA 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 630
BstDEI CTNAG 3 cut(s) 108, 545, 738
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 868
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 3 cut(s) 170, 681, 691
BstMBI GATC 3 cut(s) 167, 678, 688
BstMWI GCNNNNNNNGC 3 cut(s) 302, 718, 881
BstNSI RCATGY 1 cut(s) 716
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 2 cut(s) 158, 305
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 868
BtsIMutI CAGTG 2 cut(s) 15, 192
BveI ACCTGC 1 cut(s) 614
CciI TCATGA 2 cut(s) 760, 935
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 4 cut(s) 375, 491, 511, 803
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 6 cut(s) 79, 301, 365, 713, 761, 936
CviQI GTAC 4 cut(s) 375, 491, 511, 803
DdeI CTNAG 3 cut(s) 108, 545, 738
DpnI GATC 3 cut(s) 169, 680, 690
DpnII GATC 3 cut(s) 167, 678, 688
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco130I CCWWGG 2 cut(s) 300, 798
Eco147I AGGCCT 1 cut(s) 158
Eco32I GATATC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 792
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 300, 798
ErhI CCWWGG 2 cut(s) 300, 798
FaeI CATG 6 cut(s) 82, 304, 368, 716, 764, 939
FaqI GGGAC 1 cut(s) 182
FatI CATG 6 cut(s) 78, 300, 364, 712, 760, 935
FblI GTMKAC 1 cut(s) 785
Fnu4HI GCNGC 2 cut(s) 105, 297
FokI GGATG 1 cut(s) 875
Fsp4HI GCNGC 2 cut(s) 105, 297
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 105, 297
GsaI CCCAGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 2 cut(s) 158, 305
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 36
Hin1II CATG 6 cut(s) 82, 304, 368, 716, 764, 939
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 1 cut(s) 620
HpaII CCGG 1 cut(s) 243
HphI GGTGA 3 cut(s) 467, 490, 923
Hpy166II GTNNAC 2 cut(s) 481, 786
Hpy188I TCNGA 2 cut(s) 167, 503
Hpy188III TCNNGA 5 cut(s) 314, 761, 860, 926, 936
Hpy8I GTNNAC 2 cut(s) 481, 786
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 5 cut(s) 19, 401, 401, 626, 923
HpyCH4III ACNGT 6 cut(s) 19, 175, 196, 292, 311, 911
HpyCH4IV ACGT 3 cut(s) 142, 223, 348
HpyCH4V TGCA 9 cut(s) 29, 122, 254, 296, 601, 609, 817, 846, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 718, 881
HpyF3I CTNAG 3 cut(s) 108, 545, 738
HpySE526I ACGT 3 cut(s) 142, 223, 348
Hsp92II CATG 6 cut(s) 82, 304, 368, 716, 764, 939
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 167, 678, 688
LmnI GCTCC 2 cut(s) 709, 838
LpnPI CCDG 7 cut(s) 27, 213, 240, 256, 324, 619, 845
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 435
MaeII ACGT 3 cut(s) 142, 223, 348
MalI GATC 3 cut(s) 169, 680, 690
MboI GATC 3 cut(s) 167, 678, 688
MboII GAAGA 7 cut(s) 57, 60, 416, 470, 582, 686, 926
MflI RGATCY 1 cut(s) 688
MluCI AATT 6 cut(s) 83, 249, 399, 668, 792, 900
MnlI CCTC 3 cut(s) 103, 148, 895
MroXI GAANNNNTTC 2 cut(s) 8, 586
MseI TTAA 2 cut(s) 210, 396
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 302, 718, 881
NcoI CCATGG 1 cut(s) 300
NdeII GATC 3 cut(s) 167, 678, 688
NlaIII CATG 6 cut(s) 82, 304, 368, 716, 764, 939
NlaIV GGNNCC 1 cut(s) 328
NspI RCATGY 1 cut(s) 716
NspV TTCGAA 1 cut(s) 630
PagI TCATGA 2 cut(s) 760, 935
PceI AGGCCT 1 cut(s) 158
PdmI GAANNNNTTC 2 cut(s) 8, 586
PfeI GAWTC 1 cut(s) 620
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 2 cut(s) 106, 298
Ppu21I YACGTR 1 cut(s) 143
Psp1406I AACGTT 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 4 cut(s) 376, 492, 512, 804
RsaNI GTAC 4 cut(s) 375, 491, 511, 803
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 2 cut(s) 210, 396
SatI GCNGC 2 cut(s) 105, 297
Sau3AI GATC 3 cut(s) 167, 678, 688
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 429
SfuI TTCGAA 1 cut(s) 630
SgrAI CRCCGGYG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 6 cut(s) 83, 249, 399, 668, 792, 900
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 1 cut(s) 105
SspI AATATT 1 cut(s) 334
SspMI CTAG 1 cut(s) 435
StuI AGGCCT 1 cut(s) 158
StyI CCWWGG 2 cut(s) 300, 798
TaaI ACNGT 6 cut(s) 19, 175, 196, 292, 311, 911
TaiI ACGT 3 cut(s) 145, 226, 351
TaqI TCGA 5 cut(s) 170, 381, 630, 650, 925
TasI AATT 6 cut(s) 83, 249, 399, 668, 792, 900
TatI WGTACW 1 cut(s) 490
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 2 cut(s) 210, 396
Tru9I TTAA 2 cut(s) 210, 396
TscAI CASTG 2 cut(s) 22, 199
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 6 cut(s) 17, 95, 275, 749, 879, 924
TspRI CASTG 2 cut(s) 22, 199
XapI RAATTY 2 cut(s) 668, 792
XceI RCATGY 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 785
XmnI GAANNNNTTC 2 cut(s) 8, 586
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.