Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

OG0022574

Physical Location & Seq

Genomic Coordinates Reverse (-)

119058 .. 119690

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000250.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgcgaatcatcaatgagcctacagctgcagccattgcatatggtcttgacaagaaggcaaccagtgttggagagaagaatgtgttgatttttgatcttggtggaggtacttttgatgtctctctacttaccattgaagaaggtatttttgaggtgaaggctactgctggagatacccatttgggaggagaggattttgataataggatggtgaaccactttgttcaagagttcaagaggaagaacaagaaggacatcagtggaaatccaagagctcttaggaggttgaggacatcttgtgagagagcaaagaggaccctctcatccactgctcagactaccattgagatcgactccctgtttgagggtattgatttctattcaaccattacccgtgctaggtttgaagagcttaacatggatctgtttagaaagtgtatggagccggttgagaagtgtctgagagatgcaaagatggacaagagtactgtccatgatgtggtccttgtgggtggttctactaggattcccaaagtccagcagttgttacaagacttcttcaatggaaaggaactatgcaaaagcattaacccggacgaagctgttgcttacggagccgctgtgcaggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

210

Amino Acids

23.39

Weight (kDa)

6.34

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022574)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g22930
rosa_chinensis	RchiOBHm_Chr7g0201441
rosa_multiflora	Rmu_ssc0000250.1_g000022
rosa_rugosa	Rorug07G0107700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	1 cut(s)	429
AfaI	GTAC	2 cut(s)	109, 487
AfiI	CCNNNNNNNGG	3 cut(s)	364, 399, 499
AgsI	TTSAA	6 cut(s)	137, 227, 235, 384, 407, 562
AluBI	AGCT	4 cut(s)	26, 275, 412, 602
AluI	AGCT	4 cut(s)	26, 275, 412, 602
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	26, 29
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AspS9I	GGNCC	2 cut(s)	315, 502
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	166, 223
AvaII	GGWCC	2 cut(s)	315, 502
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	13, 41
BccI	CCATC	2 cut(s)	202, 469
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	399, 522
BfmI	CTRYAG	2 cut(s)	21, 27
BisI	GCNGC	3 cut(s)	27, 30, 618
BlsI	GCNGC	3 cut(s)	28, 31, 619
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	2 cut(s)	315, 502
BmgT120I	GGNCC	2 cut(s)	315, 502
BmiI	GGNNCC	3 cut(s)	317, 444, 616
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	457
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	593
BsaXI	ACNNNNNCTCC	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 399, 499
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	213, 323
BseLI	CCNNNNNNNGG	3 cut(s)	364, 399, 499
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	347, 452
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	13, 41
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	446, 593
BslI	CCNNNNNNNGG	3 cut(s)	364, 399, 499
BsmAI	GTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	94, 348, 421
BspACI	CCGC	1 cut(s)	618
BspCNI	CTCAG	2 cut(s)	346, 453
BspLI	GGNNCC	3 cut(s)	317, 444, 616
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	445
BssMI	GATC	3 cut(s)	94, 348, 421
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	3 cut(s)	278, 333, 461
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	213, 323
BstKTI	GATC	3 cut(s)	97, 351, 424
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	3 cut(s)	94, 348, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 614, 626
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	2 cut(s)	21, 27
BstV1I	GCAGC	2 cut(s)	13, 41
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	213, 323
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	70, 265, 327
Cac8I	GCNNGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	315, 502
Csp6I	GTAC	2 cut(s)	108, 486
CviAII	CATG	2 cut(s)	418, 494
CviJI	RGCY	9 cut(s)	19, 26, 32, 161, 275, 412, 445, 602, 617
CviKI_1	RGCY	9 cut(s)	19, 26, 32, 161, 275, 412, 445, 602, 617
CviQI	GTAC	2 cut(s)	108, 486
DdeI	CTNAG	3 cut(s)	278, 333, 461
DpnI	GATC	3 cut(s)	96, 350, 423
DpnII	GATC	3 cut(s)	94, 348, 421
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	315, 502
Eco53kI	GAGCTC	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	275
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	2 cut(s)	421, 497
FaiI	YATR	6 cut(s)	40, 42, 419, 440, 495, 577
FatI	CATG	2 cut(s)	417, 493
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	27, 30, 618
FokI	GGATG	2 cut(s)	220, 310
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	27, 30, 618
FspBI	CTAG	2 cut(s)	399, 522
GluI	GCNGC	3 cut(s)	27, 30, 618
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	2 cut(s)	446, 593
Hin1II	CATG	2 cut(s)	421, 497
HinfI	GANTC	3 cut(s)	6, 353, 526
HpaII	CCGG	2 cut(s)	446, 593
HphI	GGTGA	2 cut(s)	166, 223
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	336, 462
Hpy188III	TCNNGA	3 cut(s)	47, 227, 235
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	4 cut(s)	49, 134, 151, 244
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	5 cut(s)	29, 38, 470, 579, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 614, 626
HpyF3I	CTNAG	3 cut(s)	278, 333, 461
Hsp92II	CATG	2 cut(s)	421, 497
Kzo9I	GATC	3 cut(s)	94, 348, 421
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	442, 614
LpnPI	CCDG	7 cut(s)	76, 153, 371, 459, 551, 606, 611
Lsp1109I	GCAGC	2 cut(s)	13, 41
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	399, 522
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	3 cut(s)	96, 350, 423
MboI	GATC	3 cut(s)	94, 348, 421
MboII	GAAGA	5 cut(s)	88, 149, 253, 419, 550
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	49
MseI	TTAA	2 cut(s)	414, 588
MspA1I	CMGCKG	2 cut(s)	26, 620
MspI	CCGG	2 cut(s)	446, 593
MspR9I	CCNGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	35, 614, 626
NciI	CCSGG	1 cut(s)	593
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	3 cut(s)	94, 348, 421
NlaIII	CATG	2 cut(s)	421, 497
NlaIV	GGNNCC	3 cut(s)	317, 444, 616
PciSI	GCTCTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	6, 526
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	28, 31, 619
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	317, 444, 616
PspPI	GGNCC	2 cut(s)	315, 502
PspPPI	RGGWCCY	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	109, 487
RsaNI	GTAC	2 cut(s)	108, 486
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	414, 588
SatI	GCNGC	3 cut(s)	27, 30, 618
Sau3AI	GATC	3 cut(s)	94, 348, 421
Sau96I	GGNCC	2 cut(s)	315, 502
ScaI	AGTACT	1 cut(s)	487
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	9 cut(s)	28, 109, 145, 156, 277, 287, 404, 414, 604
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	2 cut(s)	21, 27
SinI	GGWCC	2 cut(s)	315, 502
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	2 cut(s)	399, 522
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	1 cut(s)	351
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	1 cut(s)	620
TfiI	GAWTC	2 cut(s)	6, 526
Tru1I	TTAA	2 cut(s)	414, 588
Tru9I	TTAA	2 cut(s)	414, 588
TscAI	CASTG	3 cut(s)	70, 265, 334
TseI	GCWGC	2 cut(s)	26, 29
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	3 cut(s)	70, 265, 334
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	315, 502
XagI	CCTNNNNNAGG	1 cut(s)	362
XspI	CTAG	2 cut(s)	399, 522
ZrmI	AGTACT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.