RchiOBHm_Chr7g0204011

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
21604067 .. 21604849
783 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18258

Sequence Viewer

Length: 264 bp
ATGAAATTTCTCTACTCCAGGGAAAGGGATCTTGTTGAGGCTGGCAAGCTTGAAGCTGTTTTAAGTCTTGAAAAGTTATCTACTGCTCACTCCAAGGAAAGAAACCAATCTTCTGAATTTGCAGGACTGAAATCTGGTGTAGATCAACTCAGGAAGGCTTTCCATGATATTAGCAATTCATTGGCTGTTCTTTTTTACAATGACTTGGAATTTTTGAAAAACTTGGAGTCTGGTATTGACTCGTACGTGTCTCAACTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.86

Weight (kDa)

5.36

Isoelectric Point (pI)

26.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021470)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0204011
rosa_multiflora Rmu_sc0001311.1_g000001 Rmu_sc0001843.1_g000005
rosa_roxburghii Rroxscaffold_7G00162940
rosa_samantha Rh7CG222400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 3 cut(s) 5, 116, 209
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 24
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 4 cut(s) 53, 71, 217, 260
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 2 cut(s) 49, 56
AluI AGCT 2 cut(s) 49, 56
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 36
ApoI RAATTY 3 cut(s) 5, 116, 209
Asp700I GAANNNNTTC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 18, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 2 cut(s) 18, 93
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 163
BsiWI CGTACG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 28, 142
BspCNI CTCAG 1 cut(s) 162
BspPI GGATC 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 18, 93
BssMI GATC 2 cut(s) 28, 142
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 43, 47
BstDEI CTNAG 1 cut(s) 149
BstKTI GATC 2 cut(s) 31, 145
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 28, 142
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 43, 47
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 164
CviJI RGCY 5 cut(s) 41, 49, 56, 158, 185
CviKI_1 RGCY 5 cut(s) 41, 49, 56, 158, 185
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 30, 144
DpnII GATC 2 cut(s) 28, 142
Eco130I CCWWGG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 167
FaiI YATR 1 cut(s) 165
FatI CATG 1 cut(s) 163
Hin1II CATG 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 227, 239
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 68, 151
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 2 cut(s) 28, 142
LpnPI CCDG 7 cut(s) 4, 27, 31, 108, 120, 136, 216
MaeII ACGT 1 cut(s) 246
MalI GATC 2 cut(s) 30, 144
MboI GATC 2 cut(s) 28, 142
MboII GAAGA 1 cut(s) 102
MflI RGATCY 1 cut(s) 28
MluCI AATT 4 cut(s) 5, 116, 175, 209
MlyI GAGTC 2 cut(s) 233, 236
MnlI CCTC 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
NdeII GATC 2 cut(s) 28, 142
NlaIII CATG 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 158
Pfl23II CGTACG 1 cut(s) 243
PleI GAGTC 2 cut(s) 233, 235
PpsI GAGTC 2 cut(s) 233, 235
Ppu21I YACGTR 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspLI CGTACG 1 cut(s) 243
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 2 cut(s) 28, 142
SchI GAGTC 2 cut(s) 233, 236
ScrFI CCNGG 1 cut(s) 19
SetI ASST 3 cut(s) 51, 58, 249
Sse9I AATT 4 cut(s) 5, 116, 175, 209
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 249
TasI AATT 4 cut(s) 5, 116, 175, 209
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 17, 168
XapI RAATTY 3 cut(s) 5, 116, 209
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.