Rroxscaffold_7G00162940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0021470
Physical Location & Seq
Forward (+)
5289014 .. 5291773
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162940.1

Sequence Viewer

Length: 687 bp
ATGGGGCAAGTTAAAATTGCACAGTATGAACAAAACTTCTGGGATTTGTCTACTTACCCTAGCAGGGTAGAAGCCTTAGAATCTGAGACATTGTTCTTGAGGAATTGTTTGAATGAAACTGAGCAGAATTTGCAGCACAAAGAAAATACTTTGAGCATGATTGTAAATATCTTAGACAACATTGATGTAGGAGGCGATTTTAACTCTCGTGATCCAGTTCTGAAGTTAGAACAAATTGGGAAAATGTGCTTTGATCTGGGCGCTGATGTAGCTTCTTCTGAGCAAGAGGCTAGGAAATCCAAAAGAGCAGCAGAGCTACTCCTTGCAGAACTGAATGAGGTTCAAGAGAGGAATGATGGTCTCCAAGAAGAGCTTGCAAAATCTGCTGATGAAATTTCTGTACTCTCCAAGGAAAGGGATCTTGCTGAGGCTAGCAAACTTGAAGCTGTTTTAAGTCTTGAAAAGCTATCTACTGCTCACTCCGAGGAAAGAAAAGACCAATTTTCTGAATTTGCAGGACTGAAATCTGGTCTAGATCAACTCAGGAAGGGCTTCCATGATATTAGCAATTCATTGGCCGATATTTTTTACAACGACTTGGAATTTTTGAACAACCTGGAGTCTGGTATTGACTCATGTCTCAAATTAAATAGTGCTACTGTGGTTGATGTCACGCCCCGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.56

Weight (kDa)

4.53

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021470)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0204011
rosa_multiflora Rmu_sc0001311.1_g000001 Rmu_sc0001843.1_g000005
rosa_roxburghii Rroxscaffold_7G00162940
rosa_samantha Rh7CG222400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AclWI GGATC 2 cut(s) 206, 426
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 5 cut(s) 127, 393, 509, 602, 681
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 64, 414
AgsI TTSAA 5 cut(s) 112, 344, 443, 461, 610
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 5 cut(s) 272, 316, 373, 446, 466
AluI AGCT 5 cut(s) 272, 316, 373, 446, 466
Alw26I GTCTC 3 cut(s) 80, 365, 644
AlwI GGATC 2 cut(s) 206, 426
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 133, 308
ApoI RAATTY 5 cut(s) 127, 393, 509, 602, 681
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 263
AsuNHI GCTAGC 1 cut(s) 431
BauI CACGAG 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 145, 320
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 617
BcoDI GTCTC 3 cut(s) 80, 365, 644
BfaI CTAG 4 cut(s) 60, 291, 432, 533
BfoI RGCGCY 1 cut(s) 264
BisI GCNGC 2 cut(s) 134, 309
BlsI GCNGC 2 cut(s) 135, 310
Bme1390I CCNGG 1 cut(s) 617
BmrFI CCNGG 1 cut(s) 617
BmtI GCTAGC 1 cut(s) 435
BoxI GACNNNNGTC 1 cut(s) 636
BpmI CTGGAG 1 cut(s) 638
Bpu10I CCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 408, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 414
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 408, 483
BseLI CCNNNNNNNGG 2 cut(s) 64, 414
BseMII CTCAG 5 cut(s) 75, 111, 270, 417, 556
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 145, 320
BshFI GGCC 1 cut(s) 578
BslI CCNNNNNNNGG 2 cut(s) 64, 414
BsmAI GTCTC 3 cut(s) 80, 365, 644
BsnI GGCC 1 cut(s) 578
Bso31I GGTCTC 1 cut(s) 365
Bsp143I GATC 4 cut(s) 211, 253, 418, 535
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 5 cut(s) 76, 112, 271, 418, 555
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 2 cut(s) 206, 426
BspQI GCTCTTC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 408, 483
BssMI GATC 4 cut(s) 211, 253, 418, 535
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 2 cut(s) 24, 661
Bst6I CTCTTC 1 cut(s) 363
BstAPI GCANNNNNTGC 2 cut(s) 130, 383
BstC8I GCNNGC 2 cut(s) 375, 433
BstDEI CTNAG 7 cut(s) 76, 84, 120, 172, 279, 426, 542
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 4 cut(s) 214, 256, 421, 538
BstMAI GTCTC 3 cut(s) 80, 365, 644
BstMBI GATC 4 cut(s) 211, 253, 418, 535
BstMWI GCNNNNNNNGC 3 cut(s) 130, 269, 383
BstNI CCWGG 1 cut(s) 617
BstPAI GACNNNNGTC 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 145, 320
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 1 cut(s) 578
Cac8I GCNNGC 2 cut(s) 375, 433
CfoI GCGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 157, 557, 636
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 7 cut(s) 76, 84, 120, 172, 279, 426, 542
DpnI GATC 4 cut(s) 213, 255, 420, 537
DpnII GATC 4 cut(s) 211, 253, 418, 535
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 3 cut(s) 160, 560, 639
FaiI YATR 4 cut(s) 27, 158, 558, 637
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 3 cut(s) 156, 556, 635
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 134, 309
Fsp4HI GCNGC 2 cut(s) 134, 309
FspBI CTAG 4 cut(s) 60, 291, 432, 533
GlaI GCGC 1 cut(s) 262
GluI GCNGC 2 cut(s) 134, 309
GsuI CTGGAG 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 1 cut(s) 578
HhaI GCGC 1 cut(s) 263
Hin1II CATG 3 cut(s) 160, 560, 639
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 3 cut(s) 80, 620, 632
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 5 cut(s) 85, 222, 280, 484, 508
Hpy188III TCNNGA 6 cut(s) 97, 209, 344, 458, 533, 544
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 2 cut(s) 24, 661
HpyCH4V TGCA 5 cut(s) 20, 133, 326, 377, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 269, 383
HpyF3I CTNAG 7 cut(s) 76, 84, 120, 172, 279, 426, 542
Hsp92II CATG 3 cut(s) 160, 560, 639
HspAI GCGC 1 cut(s) 261
Kzo9I GATC 4 cut(s) 211, 253, 418, 535
LguI GCTCTTC 1 cut(s) 363
Lsp1109I GCAGC 2 cut(s) 145, 320
MaeI CTAG 4 cut(s) 60, 291, 432, 533
MaeIII GTNAC 1 cut(s) 670
MalI GATC 4 cut(s) 213, 255, 420, 537
MboI GATC 4 cut(s) 211, 253, 418, 535
MboII GAAGA 2 cut(s) 267, 380
MflI RGATCY 1 cut(s) 418
MlyI GAGTC 2 cut(s) 626, 629
MnlI CCTC 7 cut(s) 93, 185, 280, 331, 342, 421, 478
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 4 cut(s) 12, 201, 452, 647
MspR9I CCNGG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 3 cut(s) 130, 269, 383
NdeII GATC 4 cut(s) 211, 253, 418, 535
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 160, 560, 639
NmuCI GTSAC 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 135, 310
PleI GAGTC 2 cut(s) 626, 628
PpsI GAGTC 2 cut(s) 626, 628
PshAI GACNNNNGTC 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 4 cut(s) 12, 201, 452, 647
SatI GCNGC 2 cut(s) 134, 309
Sau3AI GATC 4 cut(s) 211, 253, 418, 535
SchI GAGTC 2 cut(s) 626, 629
ScrFI CCNGG 1 cut(s) 617
SetI ASST 7 cut(s) 274, 318, 342, 375, 448, 468, 618
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SspMI CTAG 4 cut(s) 60, 291, 432, 533
StyD4I CCNGG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 24, 661
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 4 cut(s) 12, 201, 452, 647
Tru9I TTAA 4 cut(s) 12, 201, 452, 647
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 2 cut(s) 133, 308
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 4 cut(s) 42, 129, 405, 561
XapI RAATTY 5 cut(s) 127, 393, 509, 602, 681
XbaI TCTAGA 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 4 cut(s) 60, 291, 432, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.