Rh7CG222400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
20530394 .. 20533737
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG222400.1

Sequence Viewer

Length: 432 bp
ATGAAATTTCTCTACTCCAGGGAAAGGGATCTTGCTGAGGCTGGCAAGCTTGAAGCTATTTTAAGTCTTGAAAAGTTATCTACTGCTCACTCCGAGGAAAGAAACCAATCTTCTAAATTTGCAGGACTGAAATCTGGTGTAGATCAACTTAGGAAGGCTTTCCATGATATTAGCAATTCATTGGCTGGTCTTTTTTACAATGACTTGGAATTTTTGAAAAACTTGGAGTTTGGTATTGACTCGTGTTTCAACTTGAATAATGCTAATGTGGTTGATGTCCACCCCTTCACTGCAGCTGGTGGATTTATTTTGAGCAAATCAGATGAGGGTGCATTCTTCGATGAACATATAGCAGAACAAATTTTTGGTAATAAAGGATTGCAAGCTATTGGTCAACCACTGAAGTGTTTCTTGGTAGGAGACTTGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.76

Weight (kDa)

5.15

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021470)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0204011
rosa_multiflora Rmu_sc0001311.1_g000001 Rmu_sc0001843.1_g000005
rosa_roxburghii Rroxscaffold_7G00162940
rosa_samantha Rh7CG222400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 4 cut(s) 5, 116, 209, 360
AcuI CTGAAG 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 5 cut(s) 53, 71, 217, 250, 256
AjnI CCWGG 1 cut(s) 17
AjuI GAANNNNNNNTTGG 4 cut(s) 348, 380, 395, 427
AleI CACNNNNGTG 1 cut(s) 403
AluBI AGCT 4 cut(s) 49, 56, 296, 386
AluI AGCT 4 cut(s) 49, 56, 296, 386
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 4 cut(s) 5, 116, 209, 360
Asp700I GAANNNNTTC 2 cut(s) 158, 407
BauI CACGAG 1 cut(s) 241
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 18, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 2 cut(s) 18, 93
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 28, 142
BspCNI CTCAG 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 18, 93
BssMI GATC 2 cut(s) 28, 142
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 43, 47, 384
BstDEI CTNAG 2 cut(s) 36, 149
BstKTI GATC 2 cut(s) 31, 145
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 28, 142
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 398
Cac8I GCNNGC 3 cut(s) 43, 47, 384
CviAII CATG 1 cut(s) 164
CviJI RGCY 7 cut(s) 41, 49, 56, 158, 185, 296, 386
CviKI_1 RGCY 7 cut(s) 41, 49, 56, 158, 185, 296, 386
DdeI CTNAG 2 cut(s) 36, 149
DpnI GATC 2 cut(s) 30, 144
DpnII GATC 2 cut(s) 28, 142
Eco57I CTGAAG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 167
FaiI YATR 3 cut(s) 165, 348, 350
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
Hin1II CATG 1 cut(s) 167
HincII GTYRAC 1 cut(s) 395
HindII GTYRAC 1 cut(s) 395
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 280, 395
Hpy188I TCNGA 2 cut(s) 94, 322
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 280, 395
HpyAV CCTTC 2 cut(s) 148, 295
HpyCH4V TGCA 4 cut(s) 122, 293, 332, 382
HpyF3I CTNAG 2 cut(s) 36, 149
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 2 cut(s) 28, 142
LpnPI CCDG 7 cut(s) 4, 27, 31, 108, 120, 171, 282
Lsp1109I GCAGC 1 cut(s) 305
MalI GATC 2 cut(s) 30, 144
MboI GATC 2 cut(s) 28, 142
MboII GAAGA 2 cut(s) 102, 328
MflI RGATCY 1 cut(s) 28
MluCI AATT 5 cut(s) 5, 116, 175, 209, 360
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 31, 88, 319
MroXI GAANNNNTTC 2 cut(s) 158, 407
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 403
MspA1I CMGCKG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 19
NdeII GATC 2 cut(s) 28, 142
NlaIII CATG 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 403
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 2 cut(s) 158, 407
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 2 cut(s) 28, 142
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 19
SetI ASST 4 cut(s) 51, 58, 298, 388
SfcI CTRYAG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 403
Sse9I AATT 5 cut(s) 5, 116, 175, 209, 360
StyD4I CCNGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 339
TasI AATT 5 cut(s) 5, 116, 175, 209, 360
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 2 cut(s) 295, 405
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 17, 168, 357
TspRI CASTG 2 cut(s) 295, 405
XapI RAATTY 4 cut(s) 5, 116, 209, 360
XmnI GAANNNNTTC 2 cut(s) 158, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.