Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022475

Physical Location & Seq

Genomic Coordinates Reverse (-)

29703210 .. 29703641

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19008

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATTGTTTACAACCATATTGTGACAATGGCTCCTGCTACTAACTTGCATAAAGAGCAAAATATGATCACTCTCTCCATTCTTTTCCTGCTTTCTGTTCTCTCGCTTTCTACTCTCATTTTATTTTCAATTTCTAGATCAGGTGAGAAACTCAAGTTGCCGCAATCCCCAACACGGTTACCGATAATTGGAAACCTCCACCAACTAGGTGCACTCCCACACCGTTCTCTTCACGCCCTCTCAAAGAAGTATGGCCTTCTAATGCTACTGCACTTGGGCCAAACTCCGACATTAGTAGTTTCATCTGCAGACATGGCCAAGGAGATAATGGAGACTCATGACAGTGTTTGCTGTAGCCATCCCGAATTTACAGTTGCAAACATAGTCAAAGATAACAAGGTTGAGAGAATGAATTGTTTGATATTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

143

Amino Acids

15.95

Weight (kDa)

8.87

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	54 - 126	6.7e-11	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022475)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G238100_v2.0.a1 Prupe.4G238500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054501 RchiOBHm_Chr7g0212431

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	174, 188
AgsI	TTSAA	1 cut(s)	129
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	326
Alw44I	GTGCAC	1 cut(s)	210
AoxI	GGCC	3 cut(s)	253, 277, 315
ApaLI	GTGCAC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	214
BccI	CCATC	1 cut(s)	366
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	135, 206
BfmI	CTRYAG	2 cut(s)	306, 352
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 188
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	174, 188
BseSI	GKGCMC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	255, 279, 317
BsiHKAI	GWGCWC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	174, 188
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	255, 279, 317
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	66, 137
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	3 cut(s)	255, 279, 317
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	66, 137
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	4 cut(s)	177, 224, 344, 373
Bst6I	CTCTTC	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	69, 140
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	66, 137
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 314
BstPI	GGTNACC	1 cut(s)	177
BstSFI	CTRYAG	2 cut(s)	306, 352
BstSLI	GKGCMC	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	255, 279, 317
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	349
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	2 cut(s)	313, 338
CviJI	RGCY	5 cut(s)	32, 255, 279, 317, 357
CviKI_1	RGCY	5 cut(s)	32, 255, 279, 317, 357
DpnI	GATC	2 cut(s)	68, 139
DpnII	GATC	2 cut(s)	66, 137
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	318
Eco91I	GGTNACC	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	316, 341
FaiI	YATR	7 cut(s)	18, 51, 65, 252, 314, 339, 383
FatI	CATG	2 cut(s)	312, 337
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	2 cut(s)	135, 206
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	255, 279, 317
Hin1II	CATG	2 cut(s)	316, 341
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	10, 212
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	135, 338, 362
Hpy8I	GTNNAC	2 cut(s)	10, 212
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	4 cut(s)	177, 224, 344, 373
HpyCH4V	TGCA	5 cut(s)	49, 212, 271, 308, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 314
Hsp92II	CATG	2 cut(s)	316, 341
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	66, 137
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	48, 101, 126
MaeI	CTAG	2 cut(s)	135, 206
MaeIII	GTNAC	2 cut(s)	22, 177
MalI	GATC	2 cut(s)	68, 139
MboI	GATC	2 cut(s)	66, 137
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	4 cut(s)	129, 186, 365, 412
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	2 cut(s)	206, 248
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	55, 314
NdeII	GATC	2 cut(s)	66, 137
NlaIII	CATG	2 cut(s)	316, 341
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	66, 137
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	4 cut(s)	145, 198, 211, 402
SfcI	CTRYAG	2 cut(s)	306, 352
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	129, 186, 365, 412
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	2 cut(s)	135, 206
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	4 cut(s)	177, 224, 344, 373
TasI	AATT	4 cut(s)	129, 186, 365, 412
TauI	GCSGC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	291, 425
TspRI	CASTG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	365
XbaI	TCTAGA	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	2 cut(s)	135, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.