RchiOBHm_Chr7g0213291

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
30432779 .. 30433349
571 bp
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UTR
Exon/CDS
Intron
PRQ19090

Sequence Viewer

Length: 450 bp
ATGCTAAGCAAAATTCGCCACCGAAATCTTATCAAGATCATTAGTTGTTGCAGTCAAACTGATTTCAAAGCAGTGGTACTGAACTACATGCCTAATGGGAGCCTTGACAAGTGGTTGTATTCTGAGAGCTTTTCTCTGAACATCCTGCAGAGGTTGAATATAATGATAGATGTCGCGTCGGCATTGGAATATCTGCATCATGGTTATGGAACACCTATTGTCCATTGTGATCTGAAGCCCAGCAATATACTGCTGGATAATGATATGGGAGCACATGTAGCTGATTTTGGTATTGCAAAACTCCTAGGCGGAGGAGATTCTATGACACAGACAATGACCCTCGCCACAATTGGAATATGGAATGGAAGGAATAGTTTCCAGAAGAGGGGATGTGTACAGTTTTGGTATTGTACTCATGGAAACATTCACAAAAAAGAAGCCGACAGATGA

Protein Analysis

149

Amino Acids

16.77

Weight (kDa)

8.62

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 110 7.8e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 114 7.5e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022477)

Species Orthologous Gene IDs
prunus_persica Prupe.4G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059141 RchiOBHm_Chr7g0213291
rosa_roxburghii Rroxscaffold_1G00040160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AciI CCGC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 3 cut(s) 78, 396, 412
AfiI CCNNNNNNNGG 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 2 cut(s) 67, 157
AluBI AGCT 2 cut(s) 129, 281
AluI AGCT 2 cut(s) 129, 281
Alw21I GWGCWC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 374
AspA2I CCTAGG 1 cut(s) 304
AvrII CCTAGG 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 274
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 146
BlnI CCTAGG 1 cut(s) 304
BlpI GCTNAGC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 118, 150
Bpu1102I GCTNAGC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 141, 395
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 274
Bsp1407I TGTACA 1 cut(s) 394
Bsp143I GATC 2 cut(s) 36, 229
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 101
BspMAI CTGCAG 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 36, 229
BssT1I CCWWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 394
BstDEI CTNAG 2 cut(s) 5, 123
BstF5I GGATG 2 cut(s) 141, 395
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 2 cut(s) 39, 232
BstMBI GATC 2 cut(s) 36, 229
BstMWI GCNNNNNNNGC 2 cut(s) 15, 278
BstNSI RCATGY 2 cut(s) 91, 278
BstSFI CTRYAG 1 cut(s) 146
BstUI CGCG 1 cut(s) 176
BtsCI GGATG 2 cut(s) 141, 395
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
CseI GACGC 1 cut(s) 165
Csp6I GTAC 3 cut(s) 77, 395, 411
CviAII CATG 4 cut(s) 88, 200, 275, 416
CviJI RGCY 5 cut(s) 102, 129, 238, 281, 440
CviKI_1 RGCY 5 cut(s) 102, 129, 238, 281, 440
CviQI GTAC 3 cut(s) 77, 395, 411
DdeI CTNAG 2 cut(s) 5, 123
DpnI GATC 2 cut(s) 38, 231
DpnII GATC 2 cut(s) 36, 229
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 4 cut(s) 91, 203, 278, 419
FatI CATG 4 cut(s) 87, 199, 274, 415
FokI GGATG 2 cut(s) 128, 402
FspBI CTAG 1 cut(s) 305
GsaI CCCAGC 1 cut(s) 243
HgaI GACGC 1 cut(s) 165
Hin1II CATG 4 cut(s) 91, 203, 278, 419
HinfI GANTC 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 124, 138, 234
Hpy188III TCNNGA 2 cut(s) 34, 379
Hpy8I GTNNAC 1 cut(s) 395
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 360
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 4 cut(s) 51, 148, 196, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 278
HpyF3I CTNAG 2 cut(s) 5, 123
Hsp92II CATG 4 cut(s) 91, 203, 278, 419
Kzo9I GATC 2 cut(s) 36, 229
LmnI GCTCC 2 cut(s) 99, 269
LpnPI CCDG 4 cut(s) 158, 239, 253, 392
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 305
MalI GATC 2 cut(s) 38, 231
MboI GATC 2 cut(s) 36, 229
MboII GAAGA 1 cut(s) 394
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 2 cut(s) 12, 348
MnlI CCTC 4 cut(s) 144, 305, 350, 378
MroXI GAANNNNTTC 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 204
MunI CAATTG 1 cut(s) 348
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 15, 278
NdeII GATC 2 cut(s) 36, 229
NlaIII CATG 4 cut(s) 91, 203, 278, 419
NlaIV GGNNCC 1 cut(s) 101
NspI RCATGY 2 cut(s) 91, 278
PciI ACATGT 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 317
PscI ACATGT 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 101
PstI CTGCAG 1 cut(s) 150
RsaI GTAC 3 cut(s) 78, 396, 412
RsaNI GTAC 3 cut(s) 77, 395, 411
RseI CAYNNNNRTG 1 cut(s) 204
Sau3AI GATC 2 cut(s) 36, 229
SduI GDGCHC 1 cut(s) 274
SetI ASST 4 cut(s) 131, 155, 217, 283
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 2 cut(s) 12, 348
SsiI CCGC 1 cut(s) 309
SspMI CTAG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 399
TasI AATT 2 cut(s) 12, 348
TatI WGTACW 2 cut(s) 394, 410
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 1 cut(s) 78
TspRI CASTG 1 cut(s) 78
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 91, 278
XmaJI CCTAGG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.