Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021367

Physical Location & Seq

Genomic Coordinates Forward (+)

33070955 .. 33071230

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCCATGGCTCGAAAGCCGGAATCTGCTGTTATGATTTGGTTCCAGAATATATCCAAACGTAGGGCTAAGTATGGTGCATGGCGTGCAGAGCAGTTGGAGAATGTGAGACTTGATAGGTCATGTCCTATTTGTATGGAAGACTTCGACTTTGACGATGGTCTTATAGCCACTCGTCTGCCTCGTTTACACATTTTTCATCTGCATTGCATTCTCCGGTGGCTGGAAACCAATTACAAGTGTCCTTTATGCCGATACCCATTACCTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

91

Amino Acids

10.98

Weight (kDa)

8.95

Isoelectric Point (pI)

76.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	36 - 86	1.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	41 - 85	6.5e-13	Ring finger domain
zf-C3HC4_2	PF13923	42 - 84	3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	42 - 82	6.5e-07	RING-type zinc-finger
zf-C3HC4	PF00097	42 - 84	5.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	63 - 85	2.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021367)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174281 RchiOBHm_Chr7g0215451
rosa_laevigata	RLG00000002661
rosa_samantha	Rh7BG281900 Rh7DG293700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	63, 223
Alw26I	GTCTC	1 cut(s)	103
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
BbsI	GAAGAC	1 cut(s)	147
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	44
BoxI	GACNNNNGTC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 223
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	2 cut(s)	63, 223
BseMI	GCAATG	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	20, 217
BslI	CCNNNNNNNGG	2 cut(s)	63, 223
BsmAI	GTCTC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 91
BstPAI	GACNNNNGTC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	87
CviAII	CATG	3 cut(s)	7, 81, 123
CviJI	RGCY	5 cut(s)	11, 19, 68, 170, 223
CviKI_1	RGCY	5 cut(s)	11, 19, 68, 170, 223
DdeI	CTNAG	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 84, 126
FaiI	YATR	9 cut(s)	8, 35, 53, 75, 82, 124, 137, 167, 250
FatI	CATG	3 cut(s)	6, 80, 122
HapII	CCGG	2 cut(s)	20, 217
Hin1II	CATG	3 cut(s)	10, 84, 126
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	20, 217
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	4 cut(s)	80, 89, 205, 210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 91
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	10, 84, 126
LpnPI	CCDG	4 cut(s)	33, 59, 209, 230
MaeII	ACGT	1 cut(s)	61
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	2 cut(s)	192, 276
MseI	TTAA	1 cut(s)	274
MspI	CCGG	2 cut(s)	20, 217
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	86, 91
NcoI	CCATGG	1 cut(s)	6
NlaIII	CATG	3 cut(s)	10, 84, 126
NlaIV	GGNNCC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 181
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	23
PshAI	GACNNNNGTC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	274
SetI	ASST	3 cut(s)	64, 122, 268
Sse9I	AATT	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	13, 147
TasI	AATT	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.