RLG00000002661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0021367
Physical Location & Seq
Reverse (-)
37711367 .. 37714074
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002661

Sequence Viewer

Length: 909 bp
ATGCCCAAATACAGTCGTCAGTATGTTACCGAAGTTGACTGGGGAACTATCCCCTCACCACGTATGAACTGTACCTTGGGCCCCCCCGACGTGCTTCAGATCCAATTTAATCTCCACGCGCCACCCGGCAGGGGAGATCGTTATGGTGAATTCCTCAACTATGATTCTGAACCACCACGAGTCCTTAGGCTCCGTCATGCCGACCTCCCAACAGTTTGCAATTTGATTTGGGACTTTCTTACGAGCTTCTTGAATCTCAGTTCAACTAGGAACAAGTCTGACTTTACAAGCAGCAGGATCACTGAGGTTCTTAAAAGCATGCCTCTTGCAGAAGAGGTGCATCCAGTTATTGTTGACAAAATACTTGGTCTGCTTCCTGTAACGACATTATTGGTACCTAACAGTAATTTCATTCAAGTGGACATATTTGACGTGACATGGATGTCCATGGCTCGAAAGCCCGAATCTGCTGTTATGATTTGGTTCGAGAATATATCCAAACGTAGGGCTAAGCATGAGCCATGGGTGCACGCCACTGAAGAGCAGTTGGAGAATGCTGTTGATCTTCGGAGTTCAAAAAATATGAATACTCATAATTTAAAGCCAAAACAGAGTATCCTTTATCTCACCATGCCAGGATGTTTGGATTGCATGCACCGGTCCAACACGGCAAATACGGACGAAGAAGAACAGCGATTGAAAACTGTGAAAGATCCACCCAAGCAAGTCTCAACGCTTGGGTTTCCAATTAACCAAGATGAAGGACCGTCTAGAGACAGCTTCAGCTTTGAGCTTTTAGATAAGATATTGCCGGAGAGCTTTCAGAGGGAATTAGATCAGAAGAAGGAGGAGGAAGAAGAAGAACAGTGTATTTGTGCCCAAAAGAAAAGTCGATTTCAATCCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.82

Weight (kDa)

5.51

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021367)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174281 RchiOBHm_Chr7g0215451
rosa_laevigata RLG00000002661
rosa_samantha Rh7BG281900 Rh7DG293700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AccII CGCG 1 cut(s) 119
AclWI GGATC 3 cut(s) 94, 305, 707
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 3 cut(s) 80, 558, 766
AfaI GTAC 2 cut(s) 73, 396
AfiI CCNNNNNNNGG 2 cut(s) 131, 504
AgeI ACCGGT 1 cut(s) 657
AgsI TTSAA 6 cut(s) 253, 264, 416, 576, 700, 899
AjiI CACGTC 2 cut(s) 91, 433
AjnI CCWGG 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 5 cut(s) 246, 780, 786, 793, 819
AluI AGCT 5 cut(s) 246, 780, 786, 793, 819
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 2 cut(s) 733, 768
Alw44I GTGCAC 1 cut(s) 527
AlwI GGATC 3 cut(s) 94, 305, 707
AoxI GGCC 1 cut(s) 79
ApaI GGGCCC 1 cut(s) 83
ApaLI GTGCAC 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 874, 906
AsiGI ACCGGT 1 cut(s) 657
Asp718I GGTACC 1 cut(s) 394
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 4 cut(s) 79, 80, 660, 764
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 3 cut(s) 48, 158, 619
AvaII GGWCC 2 cut(s) 660, 764
AxyI CCTNAGG 1 cut(s) 185
BaeGI GKGCMC 3 cut(s) 83, 531, 880
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 83
BauI CACGAG 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 303
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 1 cut(s) 636
BciVI GTATCC 1 cut(s) 626
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 733, 768
BfaI CTAG 2 cut(s) 267, 771
BfuI GTATCC 1 cut(s) 626
BisI GCNGC 1 cut(s) 292
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 126, 636
Bme18I GGWCC 2 cut(s) 660, 764
BmgBI CACGTC 2 cut(s) 91, 433
BmgT120I GGNCC 4 cut(s) 79, 80, 660, 764
BmiI GGNNCC 4 cut(s) 81, 82, 191, 396
BmrFI CCNGG 2 cut(s) 126, 636
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 49
Bpu1102I GCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 898
BsaJI CCNNGG 3 cut(s) 75, 447, 521
BsaWI WCCGGW 1 cut(s) 657
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 504
Bse118I RCCGGY 1 cut(s) 657
Bse1I ACTGG 2 cut(s) 44, 344
Bse21I CCTNAGG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 898
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 3 cut(s) 75, 447, 521
BseGI GGATG 3 cut(s) 340, 447, 644
BseJI GATNNNNATC 1 cut(s) 898
BseLI CCNNNNNNNGG 2 cut(s) 131, 504
BseMII CTCAG 2 cut(s) 271, 294
BseNI ACTGG 2 cut(s) 44, 344
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 3 cut(s) 83, 531, 880
BseXI GCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 657
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 3 cut(s) 126, 658, 812
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 131, 504
BsmAI GTCTC 2 cut(s) 733, 768
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 1 cut(s) 81
Bsp120I GGGCCC 1 cut(s) 79
Bsp1286I GDGCHC 3 cut(s) 83, 531, 880
Bsp143I GATC 6 cut(s) 99, 136, 297, 562, 712, 835
Bsp1720I GCTNAGC 1 cut(s) 510
Bsp19I CCATGG 2 cut(s) 447, 521
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 270, 295
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 4 cut(s) 81, 82, 191, 396
BspPI GGATC 3 cut(s) 94, 305, 707
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 657
BsrI ACTGG 2 cut(s) 44, 344
BssAI RCCGGY 1 cut(s) 657
BssECI CCNNGG 3 cut(s) 75, 447, 521
BssMI GATC 6 cut(s) 99, 136, 297, 562, 712, 835
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 3 cut(s) 75, 447, 521
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 7 cut(s) 14, 71, 214, 404, 706, 768, 867
Bst6I CTCTTC 2 cut(s) 327, 534
BstBAI YACGTR 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 320, 531, 653
BstDEI CTNAG 4 cut(s) 185, 257, 303, 510
BstDSI CCRYGG 2 cut(s) 447, 521
BstF5I GGATG 3 cut(s) 340, 447, 644
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 6 cut(s) 102, 139, 300, 565, 715, 838
BstMAI GTCTC 2 cut(s) 733, 768
BstMBI GATC 6 cut(s) 99, 136, 297, 562, 712, 835
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNI CCWGG 1 cut(s) 636
BstNSI RCATGY 2 cut(s) 322, 655
BstSCI CCNGG 2 cut(s) 124, 634
BstSLI GKGCMC 3 cut(s) 83, 531, 880
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 303
BstX2I RGATCY 2 cut(s) 99, 712
BstYI RGATCY 2 cut(s) 99, 712
Bsu36I CCTNAGG 1 cut(s) 185
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 2 cut(s) 447, 521
BtrI CACGTC 2 cut(s) 91, 433
BtsCI GGATG 3 cut(s) 340, 447, 644
BtsIMutI CAGTG 3 cut(s) 300, 534, 872
Cac8I GCNNGC 3 cut(s) 320, 531, 653
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 657
Cfr13I GGNCC 4 cut(s) 79, 80, 660, 764
Csp6I GTAC 2 cut(s) 72, 395
CspAI ACCGGT 1 cut(s) 657
CviAII CATG 8 cut(s) 197, 319, 438, 448, 515, 522, 631, 652
CviQI GTAC 2 cut(s) 72, 395
DdeI CTNAG 4 cut(s) 185, 257, 303, 510
DpnI GATC 6 cut(s) 101, 138, 299, 564, 714, 837
DpnII GATC 6 cut(s) 99, 136, 297, 562, 712, 835
DraI TTTAAA 1 cut(s) 600
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
Eam1104I CTCTTC 2 cut(s) 327, 534
EarI CTCTTC 2 cut(s) 327, 534
Eco130I CCWWGG 3 cut(s) 75, 447, 521
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 660, 764
Eco57I CTGAAG 3 cut(s) 80, 558, 766
Eco81I CCTNAGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 3 cut(s) 75, 447, 521
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 3 cut(s) 75, 447, 521
FaeI CATG 8 cut(s) 200, 322, 441, 451, 518, 525, 634, 655
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 245
FatI CATG 8 cut(s) 196, 318, 437, 447, 514, 521, 630, 651
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 3 cut(s) 327, 454, 651
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 2 cut(s) 267, 771
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 1 cut(s) 81
HapII CCGG 3 cut(s) 126, 658, 812
HhaI GCGC 1 cut(s) 121
Hin1II CATG 8 cut(s) 200, 322, 441, 451, 518, 525, 634, 655
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 2 cut(s) 37, 355
HindII GTYRAC 2 cut(s) 37, 355
HinfI GANTC 4 cut(s) 164, 180, 253, 464
HpaII CCGG 3 cut(s) 126, 658, 812
HphI GGTGA 3 cut(s) 48, 158, 619
Hpy166II GTNNAC 4 cut(s) 37, 355, 421, 529
Hpy188I TCNGA 7 cut(s) 99, 169, 280, 570, 825, 840, 904
Hpy188III TCNNGA 3 cut(s) 250, 487, 771
Hpy8I GTNNAC 4 cut(s) 37, 355, 421, 529
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 755, 838
HpyCH4III ACNGT 7 cut(s) 14, 71, 214, 404, 706, 768, 867
HpyCH4IV ACGT 4 cut(s) 61, 90, 432, 502
HpyCH4V TGCA 6 cut(s) 219, 329, 340, 529, 651, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 4 cut(s) 185, 257, 303, 510
HpySE526I ACGT 4 cut(s) 61, 90, 432, 502
Hsp92II CATG 8 cut(s) 200, 322, 441, 451, 518, 525, 634, 655
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 398
Kzo9I GATC 6 cut(s) 99, 136, 297, 562, 712, 835
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 267, 771
MaeII ACGT 4 cut(s) 61, 90, 432, 502
MaeIII GTNAC 3 cut(s) 25, 379, 433
MalI GATC 6 cut(s) 101, 138, 299, 564, 714, 837
MboI GATC 6 cut(s) 99, 136, 297, 562, 712, 835
MboII GAAGA 9 cut(s) 344, 551, 557, 695, 698, 853, 866, 869, 872
MflI RGATCY 2 cut(s) 99, 712
MhlI GDGCHC 3 cut(s) 83, 531, 880
MluCI AATT 7 cut(s) 104, 149, 220, 406, 595, 747, 830
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 2 cut(s) 528, 687
MnlI CCTC 9 cut(s) 64, 164, 215, 298, 328, 333, 819, 841, 844
MseI TTAA 4 cut(s) 108, 312, 599, 750
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 3 cut(s) 126, 658, 812
MspR9I CCNGG 2 cut(s) 126, 636
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 636
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 526
NciI CCSGG 1 cut(s) 126
NcoI CCATGG 2 cut(s) 447, 521
NdeII GATC 6 cut(s) 99, 136, 297, 562, 712, 835
NlaIII CATG 8 cut(s) 200, 322, 441, 451, 518, 525, 634, 655
NlaIV GGNNCC 4 cut(s) 81, 82, 191, 396
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 2 cut(s) 322, 655
PaeI GCATGC 2 cut(s) 322, 655
PciSI GCTCTTC 1 cut(s) 534
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 3 cut(s) 164, 253, 464
PinAI ACCGGT 1 cut(s) 657
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 4 cut(s) 81, 82, 191, 396
PspOMI GGGCCC 1 cut(s) 79
PspPI GGNCC 4 cut(s) 79, 80, 660, 764
PsuI RGATCY 2 cut(s) 99, 712
RsaI GTAC 2 cut(s) 73, 396
RsaNI GTAC 2 cut(s) 72, 395
RseI CAYNNNNRTG 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 4 cut(s) 108, 312, 599, 750
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 6 cut(s) 99, 136, 297, 562, 712, 835
Sau96I GGNCC 4 cut(s) 79, 80, 660, 764
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 126, 636
SduI GDGCHC 3 cut(s) 83, 531, 880
SfaNI GCATC 1 cut(s) 349
SinI GGWCC 2 cut(s) 660, 764
SmiMI CAYNNNNRTG 1 cut(s) 416
SphI GCATGC 2 cut(s) 322, 655
Sse9I AATT 7 cut(s) 104, 149, 220, 406, 595, 747, 830
SspMI CTAG 2 cut(s) 267, 771
StyD4I CCNGG 2 cut(s) 124, 634
StyI CCWWGG 3 cut(s) 75, 447, 521
TaaI ACNGT 7 cut(s) 14, 71, 214, 404, 706, 768, 867
TaiI ACGT 4 cut(s) 64, 93, 435, 505
TaqI TCGA 3 cut(s) 454, 486, 892
TasI AATT 7 cut(s) 104, 149, 220, 406, 595, 747, 830
TfiI GAWTC 3 cut(s) 164, 253, 464
Tru1I TTAA 4 cut(s) 108, 312, 599, 750
Tru9I TTAA 4 cut(s) 108, 312, 599, 750
TscAI CASTG 3 cut(s) 307, 541, 872
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 80, 400, 599, 774
TspGWI ACGGA 2 cut(s) 182, 692
TspRI CASTG 3 cut(s) 307, 541, 872
VneI GTGCAC 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 660, 764
XapI RAATTY 1 cut(s) 149
XbaI TCTAGA 1 cut(s) 770
XceI RCATGY 2 cut(s) 322, 655
XspI CTAG 2 cut(s) 267, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.