Rh7DG293700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0021367
Physical Location & Seq
Forward (+)
33197012 .. 33198014
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG293700.1

Sequence Viewer

Length: 399 bp
ATGGTGAATTCCTCAACTATGATTCTGAAGCACCCGGCAGAGGAGATCCGTCATGCCGACCTCCCAACAATTTGCAATTTGATTTGGGACATTCTTACGAGCTTCTTCAATCTCAGATCAACTAGAAACAAGTCTGACTTTACAAGCAGCAAGATCACTGAGGTTCTTAAAAGCATGCCTCTTGCAGAAGAGGTGCATCCAGTTATTGTTGACAAAATACTTGCTCTGCTCCCTGTAACGACATTATTGATACCTATCGGTAATTTCATTAAAGTAGACATATTTGATGTGACTTGGATGTCCATGGCTCGAAAGCTGGAATGTGCTGTTATGATTTGGTTCGAGAATATATCCAAACGTAGGGCTAAGCATGCATGGCGCATGGCTGCACGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.22

Weight (kDa)

9.34

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021367)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174281 RchiOBHm_Chr7g0215451
rosa_laevigata RLG00000002661
rosa_samantha Rh7BG281900 Rh7DG293700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 276
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 40, 360
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 2 cut(s) 102, 316
AluI AGCT 2 cut(s) 102, 316
AlwI GGATC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 147, 386
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 16
BbvI GCAGC 2 cut(s) 159, 373
BcnI CCSGG 1 cut(s) 35
BfaI CTAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 148, 387
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 2 cut(s) 149, 388
Bme1390I CCNGG 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 360
Bse1I ACTGG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 196, 303
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 40, 360
BseMII CTCAG 2 cut(s) 127, 150
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 159, 373
BsgI GTGCAG 1 cut(s) 372
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 40, 360
BsmFI GGGAC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 45, 116, 153
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 303
BspCNI CTCAG 2 cut(s) 126, 151
BspPI GGATC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 3 cut(s) 45, 116, 153
BssT1I CCWWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 176, 372, 391
BstDEI CTNAG 3 cut(s) 113, 159, 366
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 196, 303
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 48, 119, 156
BstMBI GATC 3 cut(s) 45, 116, 153
BstMWI GCNNNNNNNGC 2 cut(s) 371, 376
BstNSI RCATGY 2 cut(s) 178, 374
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 159, 373
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 196, 303
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 176, 372, 391
CfoI GCGC 1 cut(s) 381
CviAII CATG 6 cut(s) 53, 175, 304, 371, 375, 382
CviJI RGCY 5 cut(s) 102, 308, 316, 365, 386
CviKI_1 RGCY 5 cut(s) 102, 308, 316, 365, 386
DdeI CTNAG 3 cut(s) 113, 159, 366
DpnI GATC 3 cut(s) 47, 118, 155
DpnII GATC 3 cut(s) 45, 116, 153
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 6 cut(s) 56, 178, 307, 374, 378, 385
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 101
FatI CATG 6 cut(s) 52, 174, 303, 370, 374, 381
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 148, 387
FokI GGATG 2 cut(s) 183, 310
Fsp4HI GCNGC 2 cut(s) 148, 387
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 148, 387
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 381
Hin1II CATG 6 cut(s) 56, 178, 307, 374, 378, 385
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 211, 277
Hpy188I TCNGA 3 cut(s) 27, 116, 136
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 2 cut(s) 211, 277
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 75, 185, 196, 374, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 376
HpyF3I CTNAG 3 cut(s) 113, 159, 366
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 6 cut(s) 56, 178, 307, 374, 378, 385
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 45, 116, 153
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 4 cut(s) 48, 213, 246, 302
Lsp1109I GCAGC 2 cut(s) 159, 373
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 235, 289
MalI GATC 3 cut(s) 47, 118, 155
MboI GATC 3 cut(s) 45, 116, 153
MboII GAAGA 2 cut(s) 97, 200
MflI RGATCY 1 cut(s) 45
MluCI AATT 4 cut(s) 7, 69, 76, 262
MnlI CCTC 6 cut(s) 22, 34, 71, 154, 184, 189
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 168, 270
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 371, 376
NciI CCSGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 303
NdeII GATC 3 cut(s) 45, 116, 153
NlaIII CATG 6 cut(s) 56, 178, 307, 374, 378, 385
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 2 cut(s) 178, 374
PaeI GCATGC 2 cut(s) 178, 374
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 149, 388
PsuI RGATCY 1 cut(s) 45
SaqAI TTAA 2 cut(s) 168, 270
SatI GCNGC 2 cut(s) 148, 387
Sau3AI GATC 3 cut(s) 45, 116, 153
ScrFI CCNGG 1 cut(s) 35
SetI ASST 7 cut(s) 63, 104, 165, 195, 256, 318, 361
SfaNI GCATC 1 cut(s) 205
SphI GCATGC 2 cut(s) 178, 374
Sse9I AATT 4 cut(s) 7, 69, 76, 262
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 303
TaiI ACGT 1 cut(s) 361
TaqI TCGA 2 cut(s) 310, 342
TasI AATT 4 cut(s) 7, 69, 76, 262
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 168, 270
Tru9I TTAA 2 cut(s) 168, 270
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 147, 386
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 1 cut(s) 163
XapI RAATTY 1 cut(s) 7
XceI RCATGY 2 cut(s) 178, 374
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.