RchiOBHm_Chr7g0216091

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
33740707 .. 33743328
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19335

Sequence Viewer

Length: 1419 bp
ATGGCAACCAGCCAGCTACTCCTCCTCCTCCTCCTCCTCCCTTTCATTTTAAACCCTTTCCCAAATGTAGCCGTTTCCGGGGTCGGCATTAACTACGGCACTCTCGGAAACAACCTCCCACCACCAAAAGGAGTAGCTCAGCTACTACAGTCCACTCTCATAGACAAGGTAAAAATTTATGACACCAACCCGGAGATCCTCCAGGCCTTCTCCAACACCGGGATCGACCTCATTGTAGCCGTGGAGAACTCCCGGGTGGCCAACATCAGCTCAGATGTGTCCTCAGCCGATCAGTGGTTCGCCACTCGTGTCCTGCCCTTCATTCCTGCCACTTCCATCACAGCCATTGCTGTAGGGAACGAGTACCTAACTTCAAACAGTGATCACCAAGTACTTGACCCTGCTGCTCTTGTCCAAGCAATGCAGAACTTGCATTCAGTGCTCATAGCCCGAGCACTAGACAGAAAGATCAAGATCACAACTCCACATAGCATGGCCGTTTTAGCCTCCTCATTTCCTCCTTCAGCTTCAACTTTTGCTACAGATCTCGTACCAACTATGACTTCAATAGTTGCATTCTTGGCTGATACTGCTTCCCCTTTTATGATCAATGCATACCCTTATTTTGCATACAGGGACAACCCGGACATGGTTAATATACAATATGCTTTACTAGGGAACTCAACATCAACTGGTGTGCGTGACCCCAAGGGGTACACATACACCAACATGTTGGATGCACAGATTGATGCTGTTCGGTCTGCGGTTGGTGCACTAGGACTAGGACCACACCGGACAGTGGAGATTATGGTATCCGAATCCGGGTGGCCATCCAAAGGAGACACTAATGAAATTGCTGCCACCCCGGAAAATGCCAAGACTTACAACACAAGGCTGATCGAACGCGCACAGTCCAACAAAGGAACACCCATGAAGCCTCTAGACAAGATTGAGGTATTTGTGTTTGCTTTGTTTAATGAGAACAAGAAAGAAGGGGTTGCAAGTGAAAGGAACTTTGGGATTTTTAATGGTGATGGGTCAAAGGTGTATGAGGTAGACTTGAGCTGCCAGTTTTGCAGTGGTGATAGTGGTAATGGTGGTAATGGAGGGTTTGGTGAGAAACTATCTGGTGCGGTCAGGGGACCGTCGGTTTGGTGCATTGCTAAGCCACATGCTGATGAGAAGGTGCTTCAGGCTGTGTTGGATTTTTGCTGTGGCGGTGGTGGTGTGGACTGCAGAGAGATATATGAAAATGGGGATTGCTTTGCGCCTGATAAGCTGCTTGCACATGCATCATATGCTATGAATGCTTATTACCAGATGCATGGAAGGAACTACTGGAATTGTGACTTCAAGGGCACTGGCTTAGTAACTTTTAGTGATCCAACTTATGGGAGATGCCGGTATCCTCAACAGTAG

Protein Analysis

472

Amino Acids

50.94

Weight (kDa)

5.33

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 28 - 353 2.9e-80 Glycosyl hydrolases family 17
X8 PF07983 385 - 455 4.3e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016860)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g25740
malus_domestica MD06G1006900.v1.1
prunus_persica Prupe.5G008200_v2.0.a1
pyrus_communis pycom06g00600
rosa_chinensis RchiOBHm_Chr7g0216091
rosa_laevigata RLG00000002595
rosa_multiflora Rmu_sc0009767.1_g000003 Rmu_sc0024130.1_g000001
rosa_roxburghii Rroxscaffold_3G00243660
rosa_rugosa Rorug07G0158800
rosa_samantha Rh7AG295800 Rh7CG316200 Rh7DG298700
rosa_wichuraiana Rw7G025160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1391
AccI GTMKAC 1 cut(s) 1056
AccII CGCG 1 cut(s) 906
AciI CCGC 3 cut(s) 764, 1133, 1218
AclWI GGATC 3 cut(s) 190, 230, 1376
AcoI YGGCCR 3 cut(s) 258, 495, 827
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 507, 1175
AfaI GTAC 4 cut(s) 365, 393, 552, 716
AfiI CCNNNNNNNGG 9 cut(s) 78, 128, 219, 294, 649, 799, 822, 836, 1391
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 4 cut(s) 375, 531, 567, 1354
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 4 cut(s) 547, 579, 999, 1031
AluBI AGCT 7 cut(s) 16, 137, 142, 270, 527, 1065, 1279
AluI AGCT 7 cut(s) 16, 137, 142, 270, 527, 1065, 1279
Alw21I GWGCWC 3 cut(s) 444, 457, 775
Alw26I GTCTC 1 cut(s) 834
Alw44I GTGCAC 1 cut(s) 771
AlwI GGATC 3 cut(s) 190, 230, 1376
Ama87I CYCGRG 2 cut(s) 252, 450
AoxI GGCC 4 cut(s) 204, 258, 495, 827
ApaLI GTGCAC 1 cut(s) 771
ApeKI GCWGC 4 cut(s) 404, 857, 1065, 1279
ApoI RAATTY 1 cut(s) 174
ArsI GACNNNNNNTTYG 2 cut(s) 1134, 1166
AspLEI GCGC 2 cut(s) 908, 1270
AspS9I GGNCC 2 cut(s) 785, 1142
AsuC2I CCSGG 8 cut(s) 79, 191, 220, 253, 254, 644, 823, 866
AsuHPI GGTGA 4 cut(s) 377, 1043, 1094, 1127
AvaI CYCGRG 2 cut(s) 252, 450
AvaII GGWCC 2 cut(s) 785, 1142
BaeGI GKGCMC 2 cut(s) 775, 1361
BalI TGGCCA 2 cut(s) 260, 829
BauI CACGAG 1 cut(s) 306
Bbv12I GWGCWC 3 cut(s) 444, 457, 775
BbvCI CCTCAGC 1 cut(s) 283
BbvI GCAGC 4 cut(s) 391, 844, 1052, 1266
BccI CCATC 3 cut(s) 344, 838, 1028
BceAI ACGGC 4 cut(s) 56, 112, 224, 482
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 2 cut(s) 823, 1416
BclI TGATCA 2 cut(s) 382, 606
BcnI CCSGG 8 cut(s) 79, 191, 220, 253, 254, 644, 823, 866
BcoDI GTCTC 1 cut(s) 834
BfaI CTAG 5 cut(s) 458, 674, 776, 782, 941
BfmI CTRYAG 4 cut(s) 146, 351, 540, 1234
BfuI GTATCC 2 cut(s) 823, 1416
BglII AGATCT 1 cut(s) 544
BisI GCNGC 4 cut(s) 405, 858, 1066, 1280
BlpI GCTNAGC 2 cut(s) 138, 1164
BlsI GCNGC 4 cut(s) 406, 859, 1067, 1281
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 9 cut(s) 79, 191, 203, 220, 253, 254, 644, 823, 866
Bme18I GGWCC 2 cut(s) 785, 1142
BmeT110I CYCGRG 2 cut(s) 252, 450
BmgT120I GGNCC 2 cut(s) 785, 1142
BmiI GGNNCC 1 cut(s) 1143
BmrFI CCNGG 9 cut(s) 79, 191, 203, 220, 253, 254, 644, 823, 866
BmsI GCATC 5 cut(s) 727, 739, 1301, 1311, 1388
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 283
Bpu1102I GCTNAGC 2 cut(s) 138, 1164
BpuEI CTTGAG 1 cut(s) 1081
BpuMI CCSGG 8 cut(s) 79, 191, 220, 253, 254, 644, 823, 866
BsaBI GATNNNNATC 1 cut(s) 473
BsaJI CCNNGG 5 cut(s) 78, 240, 252, 708, 864
BsaWI WCCGGW 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 9 cut(s) 78, 128, 219, 294, 649, 799, 822, 836, 1391
Bse118I RCCGGY 1 cut(s) 1401
Bse1I ACTGG 4 cut(s) 697, 1069, 1343, 1366
Bse3DI GCAATG 3 cut(s) 345, 426, 1158
Bse8I GATNNNNATC 1 cut(s) 473
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 5 cut(s) 78, 240, 252, 708, 864
BseGI GGATG 2 cut(s) 742, 830
BseJI GATNNNNATC 1 cut(s) 473
BseLI CCNNNNNNNGG 9 cut(s) 78, 128, 219, 294, 649, 799, 822, 836, 1391
BseMI GCAATG 3 cut(s) 345, 426, 1158
BseMII CTCAG 3 cut(s) 152, 285, 297
BseNI ACTGG 4 cut(s) 697, 1069, 1343, 1366
BseRI GAGGAG 7 cut(s) 11, 14, 17, 20, 23, 26, 499
BseSI GKGCMC 2 cut(s) 775, 1361
BseXI GCAGC 4 cut(s) 391, 844, 1052, 1266
Bsh1236I CGCG 1 cut(s) 906
BshFI GGCC 4 cut(s) 206, 260, 497, 829
BsiHKAI GWGCWC 3 cut(s) 444, 457, 775
BsiHKCI CYCGRG 2 cut(s) 252, 450
BsiSI CCGG 9 cut(s) 78, 191, 219, 253, 644, 793, 822, 866, 1402
BslFI GGGAC 2 cut(s) 650, 1155
BslI CCNNNNNNNGG 9 cut(s) 78, 128, 219, 294, 649, 799, 822, 836, 1391
BsmAI GTCTC 1 cut(s) 834
BsmFI GGGAC 2 cut(s) 650, 1155
BsmI GAATGC 3 cut(s) 433, 575, 1312
BsnI GGCC 4 cut(s) 206, 260, 497, 829
BsoBI CYCGRG 2 cut(s) 252, 450
Bsp1286I GDGCHC 4 cut(s) 444, 457, 775, 1361
Bsp1720I GCTNAGC 2 cut(s) 138, 1164
BspACI CCGC 3 cut(s) 764, 1133, 1218
BspANI GGCC 4 cut(s) 206, 260, 497, 829
BspCNI CTCAG 3 cut(s) 151, 284, 296
BspFNI CGCG 1 cut(s) 906
BspLI GGNNCC 1 cut(s) 1143
BspMAI CTGCAG 1 cut(s) 1238
BspPI GGATC 3 cut(s) 190, 230, 1376
BsrDI GCAATG 3 cut(s) 345, 426, 1158
BsrFI RCCGGY 1 cut(s) 1401
BsrI ACTGG 4 cut(s) 697, 1069, 1343, 1366
BssAI RCCGGY 1 cut(s) 1401
BssECI CCNNGG 5 cut(s) 78, 240, 252, 708, 864
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 6 cut(s) 150, 380, 799, 912, 1146, 1416
BstAPI GCANNNNNTGC 3 cut(s) 430, 439, 1298
BstC8I GCNNGC 2 cut(s) 14, 1284
BstDEI CTNAG 5 cut(s) 138, 271, 283, 1164, 1366
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 742, 830
BstFNI CGCG 1 cut(s) 906
BstHHI GCGC 2 cut(s) 908, 1270
BstMAI GTCTC 1 cut(s) 834
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 3 cut(s) 733, 1175, 1292
BstSCI CCNGG 9 cut(s) 77, 189, 201, 218, 251, 252, 642, 821, 864
BstSFI CTRYAG 4 cut(s) 146, 351, 540, 1234
BstSLI GKGCMC 2 cut(s) 775, 1361
BstUI CGCG 1 cut(s) 906
BstV1I GCAGC 4 cut(s) 391, 844, 1052, 1266
BstX2I RGATCY 2 cut(s) 195, 544
BstXI CCANNNNNNTGG 2 cut(s) 733, 1325
BstYI RGATCY 2 cut(s) 195, 544
BsuI GTATCC 2 cut(s) 823, 1416
BsuRI GGCC 4 cut(s) 206, 260, 497, 829
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 742, 830
BtsI GCAGTG 1 cut(s) 1084
BtsIMutI CAGTG 6 cut(s) 299, 385, 444, 804, 1084, 1359
Cac8I GCNNGC 2 cut(s) 14, 1284
CfoI GCGC 2 cut(s) 908, 1270
Cfr10I RCCGGY 1 cut(s) 1401
Cfr13I GGNCC 2 cut(s) 785, 1142
Cfr9I CCCGGG 1 cut(s) 252
Csp6I GTAC 4 cut(s) 364, 392, 551, 715
CviAII CATG 7 cut(s) 493, 649, 730, 931, 1172, 1289, 1325
CviQI GTAC 4 cut(s) 364, 392, 551, 715
DdeI CTNAG 5 cut(s) 138, 271, 283, 1164, 1366
DraI TTTAAA 1 cut(s) 51
EaeI YGGCCR 3 cut(s) 258, 495, 827
Eco130I CCWWGG 1 cut(s) 708
Eco147I AGGCCT 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 785, 1142
Eco57I CTGAAG 2 cut(s) 507, 1175
Eco88I CYCGRG 2 cut(s) 252, 450
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 708
EcoT22I ATGCAT 3 cut(s) 616, 1294, 1326
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 7 cut(s) 496, 652, 733, 934, 1175, 1292, 1328
FaqI GGGAC 2 cut(s) 650, 1155
FatI CATG 7 cut(s) 492, 648, 729, 930, 1171, 1288, 1324
FauNDI CATATG 1 cut(s) 1297
FbaI TGATCA 2 cut(s) 382, 606
FblI GTMKAC 1 cut(s) 1056
Fnu4HI GCNGC 4 cut(s) 405, 858, 1066, 1280
FokI GGATG 2 cut(s) 749, 817
Fsp4HI GCNGC 4 cut(s) 405, 858, 1066, 1280
FspBI CTAG 5 cut(s) 458, 674, 776, 782, 941
GlaI GCGC 2 cut(s) 907, 1269
GluI GCNGC 4 cut(s) 405, 858, 1066, 1280
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 4 cut(s) 206, 260, 497, 829
HapII CCGG 9 cut(s) 78, 191, 219, 253, 644, 793, 822, 866, 1402
HhaI GCGC 2 cut(s) 908, 1270
Hin1II CATG 7 cut(s) 496, 652, 733, 934, 1175, 1292, 1328
Hin6I GCGC 2 cut(s) 906, 1268
HinP1I GCGC 2 cut(s) 906, 1268
HinfI GANTC 1 cut(s) 818
HpaII CCGG 9 cut(s) 78, 191, 219, 253, 644, 793, 822, 866, 1402
HphI GGTGA 4 cut(s) 377, 1043, 1094, 1127
Hpy166II GTNNAC 5 cut(s) 153, 717, 773, 1057, 1231
Hpy188I TCNGA 3 cut(s) 107, 274, 817
Hpy188III TCNNGA 2 cut(s) 472, 941
Hpy8I GTNNAC 5 cut(s) 153, 717, 773, 1057, 1231
Hpy99I CGWCG 1 cut(s) 1150
HpyAV CCTTC 6 cut(s) 217, 328, 531, 986, 1177, 1323
HpyCH4III ACNGT 6 cut(s) 150, 380, 799, 912, 1146, 1416
HpyF3I CTNAG 5 cut(s) 138, 271, 283, 1164, 1366
Hsp92II CATG 7 cut(s) 496, 652, 733, 934, 1175, 1292, 1328
HspAI GCGC 2 cut(s) 906, 1268
Ksp22I TGATCA 2 cut(s) 382, 606
Lsp1109I GCAGC 4 cut(s) 391, 844, 1052, 1266
LweI GCATC 5 cut(s) 727, 739, 1301, 1311, 1388
MaeI CTAG 5 cut(s) 458, 674, 776, 782, 941
MaeIII GTNAC 3 cut(s) 701, 1346, 1369
MflI RGATCY 2 cut(s) 195, 544
MhlI GDGCHC 4 cut(s) 444, 457, 775, 1361
MlsI TGGCCA 2 cut(s) 260, 829
MluCI AATT 3 cut(s) 174, 852, 1342
MluNI TGGCCA 2 cut(s) 260, 829
MmeI TCCRAC 5 cut(s) 237, 714, 939, 1182, 1409
Mox20I TGGCCA 2 cut(s) 260, 829
Mph1103I ATGCAT 3 cut(s) 616, 1294, 1326
MscI TGGCCA 2 cut(s) 260, 829
MseI TTAA 5 cut(s) 50, 90, 654, 975, 1026
MslI CAYNNNNRTG 2 cut(s) 728, 1176
Msp20I TGGCCA 2 cut(s) 260, 829
MspI CCGG 9 cut(s) 78, 191, 219, 253, 644, 793, 822, 866, 1402
MspR9I CCNGG 9 cut(s) 79, 191, 203, 220, 253, 254, 644, 823, 866
Mva1269I GAATGC 3 cut(s) 433, 575, 1312
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 906
NciI CCSGG 8 cut(s) 79, 191, 220, 253, 254, 644, 823, 866
NdeI CATATG 1 cut(s) 1297
NlaIII CATG 7 cut(s) 496, 652, 733, 934, 1175, 1292, 1328
NlaIV GGNNCC 1 cut(s) 1143
NmuCI GTSAC 2 cut(s) 701, 1346
NsiI ATGCAT 3 cut(s) 616, 1294, 1326
NspI RCATGY 3 cut(s) 733, 1175, 1292
PceI AGGCCT 1 cut(s) 206
PciI ACATGT 1 cut(s) 729
PctI GAATGC 3 cut(s) 433, 575, 1312
PfeI GAWTC 1 cut(s) 818
PflMI CCANNNNNTGG 1 cut(s) 1391
PkrI GCNGC 4 cut(s) 406, 859, 1067, 1281
PscI ACATGT 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 1143
PspPI GGNCC 2 cut(s) 785, 1142
PstI CTGCAG 1 cut(s) 1238
PsuI RGATCY 2 cut(s) 195, 544
RsaI GTAC 4 cut(s) 365, 393, 552, 716
RsaNI GTAC 4 cut(s) 364, 392, 551, 715
RseI CAYNNNNRTG 2 cut(s) 728, 1176
SaqAI TTAA 5 cut(s) 50, 90, 654, 975, 1026
SatI GCNGC 4 cut(s) 405, 858, 1066, 1280
Sau96I GGNCC 2 cut(s) 785, 1142
ScaI AGTACT 1 cut(s) 393
ScrFI CCNGG 9 cut(s) 79, 191, 203, 220, 253, 254, 644, 823, 866
SduI GDGCHC 4 cut(s) 444, 457, 775, 1361
SfaNI GCATC 5 cut(s) 727, 739, 1301, 1311, 1388
SfcI CTRYAG 4 cut(s) 146, 351, 540, 1234
SinI GGWCC 2 cut(s) 785, 1142
SmaI CCCGGG 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 728, 1176
SmlI CTYRAG 1 cut(s) 1060
SmoI CTYRAG 1 cut(s) 1060
Sse9I AATT 3 cut(s) 174, 852, 1342
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 3 cut(s) 764, 1133, 1218
SspMI CTAG 5 cut(s) 458, 674, 776, 782, 941
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 9 cut(s) 77, 189, 201, 218, 251, 252, 642, 821, 864
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 6 cut(s) 150, 380, 799, 912, 1146, 1416
TaqI TCGA 2 cut(s) 225, 900
TaqII GACCGA 1 cut(s) 747
TasI AATT 3 cut(s) 174, 852, 1342
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 5 cut(s) 50, 90, 654, 975, 1026
Tru9I TTAA 5 cut(s) 50, 90, 654, 975, 1026
TscAI CASTG 6 cut(s) 299, 385, 444, 804, 1084, 1366
TseFI GTSAC 2 cut(s) 701, 1346
TseI GCWGC 4 cut(s) 404, 857, 1065, 1279
Tsp45I GTSAC 2 cut(s) 701, 1346
TspDTI ATGAA 6 cut(s) 34, 310, 864, 947, 1263, 1319
TspMI CCCGGG 1 cut(s) 252
TspRI CASTG 6 cut(s) 299, 385, 444, 804, 1084, 1366
Van91I CCANNNNNTGG 1 cut(s) 1391
VneI GTGCAC 1 cut(s) 771
VpaK11BI GGWCC 2 cut(s) 785, 1142
XapI RAATTY 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 940
XceI RCATGY 3 cut(s) 733, 1175, 1292
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XmaI CCCGGG 1 cut(s) 252
XmiI GTMKAC 1 cut(s) 1056
XspI CTAG 5 cut(s) 458, 674, 776, 782, 941
ZrmI AGTACT 1 cut(s) 393
Zsp2I ATGCAT 3 cut(s) 616, 1294, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.