Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016860

Physical Location & Seq

Genomic Coordinates Forward (+)

36108253 .. 36109902

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCAACCACCCAGATACTCCTTCTCATCCTCCTCCCTTTCATTTTAAACCCTTTCCCAAATGTAGCCGTTTCCGGGGTCGGAATTAACTACGGCACTCTCGGAAACAACCTCCCACCACCAAAAAGAGTAGCTCAGCTACTACAGTCCACTCTCATAGACAAGGTAAAAATTTATGACACCAACCCGGAGATCCTCCAGGCCTTCTCCAACACTGGGATCGACCTCATTGTCGCCGTGGAGAACTCCCGGGTGGCCAACATCAGCTCCGAAGTGTCCTCAGCCGATCAGTGGTTCGCCACTCGTGTCCTGCCCTTCATTCCTGCCACTTCCATCACAGCCATTGCTGTAGGAAACGAGTACCTAACTTCAAACAGTGATCACCAAGTACTTGACCCTGCTGCTCTTGTCCAAGCAATGCAGAACTTACATTCAGTGCTCATAGCCCGAGCACTCGACAGAAAGATCAAGATCACAACTCCACATAGCATGGCCATTTTAGCCTCCTCATTTCCTCCTTCAGCTTCAACTTTTGCTACAGATCTCGTACCAACTATGACTTCAATAGTTGCATTCTTGGCTGATACTGCTTCCCCTTTTATGATCAATGCATACCCTTATTTTGCATACAGGGACAACCCGGACATGATTGATGCCGTTCGGTCTGCGGTTGATGCACTAGGACTTGGACCACACCGGACAGTGGAGATTATGGTATCCGAATCCGGGTGGCCATCCAAAGGAGACACTAATGAAATTGCTGCCACCCCGGAAAATGCCAAGACTTACAACACAAGGCTGATCGAACGCGCACAGTCCAACAAAGGAACACCCATGAAGCCTCTAGACAAGATTGAGGTGTTTGTGTTTGCTTTGTTTAATGAGAACAAGAAGGAAGGGGTTGCAAGTGAGAGGAACTTTGGGATTTTTAATGGTGATGGGTCAAAGGTGTATGAGGTGGACTTGAGCTGCCAGTTTTGCAGTGGTGATAGTGGTAATGGTGGTAATGGAGGATTTGGTGAGAAACTATCTGGTGCGGTCAGGGGACCGTCGGTTTGGTGCATTGCTAAGCCACATGCTGATGAGAAGGTGCTTCAGGCTGTGTTGGATTTTTGCTGTGGCGGTGGCGGTGTGGACTGCAGAGAGATATATGAAAATGGGGATTGCTTTGCGCCTGATAAGCTGCTTGCACATGCATCATATGCTATGAATGCTTATTACCAGATGCATGGAAGGAACTACTGGAATTGTGACTTCAAGGGCACTGGCTTAGTAACTTTTAGTGATCCAAGTAAGCATACACACCATACTACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

439

Amino Acids

47.4

Weight (kDa)

5.48

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	27 - 213	5.9e-41	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	215 - 321	1.9e-28	Glycosyl hydrolases family 17
X8	PF07983	353 - 423	3.9e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25740
malus_domestica	MD06G1006900.v1.1
prunus_persica	Prupe.5G008200_v2.0.a1
pyrus_communis	pycom06g00600
rosa_chinensis	RchiOBHm_Chr7g0216091
rosa_laevigata	RLG00000002595
rosa_multiflora	Rmu_sc0009767.1_g000003 Rmu_sc0024130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243660
rosa_rugosa	Rorug07G0158800
rosa_samantha	Rh7AG295800 Rh7CG316200 Rh7DG298700
rosa_wichuraiana	Rw7G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	810
AciI	CCGC	4 cut(s)	668, 1037, 1122, 1128
AclWI	GGATC	3 cut(s)	187, 227, 1280
AcoI	YGGCCR	3 cut(s)	255, 492, 731
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	504, 1079
AfaI	GTAC	3 cut(s)	362, 390, 549
AfiI	CCNNNNNNNGG	6 cut(s)	75, 216, 291, 703, 726, 740
AgsI	TTSAA	4 cut(s)	372, 528, 564, 1258
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	544, 576
AluBI	AGCT	7 cut(s)	134, 139, 267, 524, 969, 1183, 1316
AluI	AGCT	7 cut(s)	134, 139, 267, 524, 969, 1183, 1316
Alw21I	GWGCWC	2 cut(s)	441, 454
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	3 cut(s)	187, 227, 1280
Ama87I	CYCGRG	2 cut(s)	249, 447
AoxI	GGCC	4 cut(s)	201, 255, 492, 731
ApeKI	GCWGC	4 cut(s)	401, 761, 969, 1183
ApoI	RAATTY	1 cut(s)	171
ArsI	GACNNNNNNTTYG	2 cut(s)	1038, 1070
AspLEI	GCGC	2 cut(s)	812, 1174
AspS9I	GGNCC	2 cut(s)	689, 1046
AsuC2I	CCSGG	7 cut(s)	76, 188, 250, 251, 641, 727, 770
AsuHPI	GGTGA	4 cut(s)	374, 947, 998, 1031
AvaI	CYCGRG	2 cut(s)	249, 447
AvaII	GGWCC	2 cut(s)	689, 1046
BaeGI	GKGCMC	1 cut(s)	1265
BalI	TGGCCA	3 cut(s)	257, 494, 733
BauI	CACGAG	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	441, 454
BbvCI	CCTCAGC	1 cut(s)	280
BbvI	GCAGC	4 cut(s)	388, 748, 956, 1170
BccI	CCATC	3 cut(s)	341, 742, 932
BceAI	ACGGC	4 cut(s)	53, 109, 221, 641
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	727
BclI	TGATCA	2 cut(s)	379, 603
BcnI	CCSGG	7 cut(s)	76, 188, 250, 251, 641, 727, 770
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	2 cut(s)	680, 845
BfmI	CTRYAG	5 cut(s)	143, 348, 537, 1138, 1311
BfuI	GTATCC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	4 cut(s)	402, 762, 970, 1184
BlpI	GCTNAGC	2 cut(s)	135, 1068
BlsI	GCNGC	4 cut(s)	403, 763, 971, 1185
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	8 cut(s)	76, 188, 200, 250, 251, 641, 727, 770
Bme18I	GGWCC	2 cut(s)	689, 1046
BmeT110I	CYCGRG	2 cut(s)	249, 447
BmgT120I	GGNCC	2 cut(s)	689, 1046
BmiI	GGNNCC	1 cut(s)	1047
BmrFI	CCNGG	8 cut(s)	76, 188, 200, 250, 251, 641, 727, 770
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	4 cut(s)	643, 664, 1205, 1215
BmuI	ACTGGG	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	280
Bpu1102I	GCTNAGC	2 cut(s)	135, 1068
BpuEI	CTTGAG	1 cut(s)	985
BpuMI	CCSGG	7 cut(s)	76, 188, 250, 251, 641, 727, 770
BsaBI	GATNNNNATC	1 cut(s)	470
BsaJI	CCNNGG	4 cut(s)	75, 237, 249, 768
BsaWI	WCCGGW	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 216, 291, 703, 726, 740
Bse1I	ACTGG	4 cut(s)	220, 973, 1247, 1270
Bse3DI	GCAATG	3 cut(s)	342, 423, 1062
Bse8I	GATNNNNATC	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	4 cut(s)	75, 237, 249, 768
BseGI	GGATG	2 cut(s)	27, 734
BseJI	GATNNNNATC	1 cut(s)	470
BseLI	CCNNNNNNNGG	6 cut(s)	75, 216, 291, 703, 726, 740
BseMI	GCAATG	3 cut(s)	342, 423, 1062
BseMII	CTCAG	2 cut(s)	149, 294
BseNI	ACTGG	4 cut(s)	220, 973, 1247, 1270
BseRI	GAGGAG	2 cut(s)	23, 496
BseSI	GKGCMC	1 cut(s)	1265
BseXI	GCAGC	4 cut(s)	388, 748, 956, 1170
Bsh1236I	CGCG	1 cut(s)	810
BshFI	GGCC	4 cut(s)	203, 257, 494, 733
BsiHKAI	GWGCWC	2 cut(s)	441, 454
BsiHKCI	CYCGRG	2 cut(s)	249, 447
BsiSI	CCGG	7 cut(s)	75, 188, 250, 641, 697, 726, 770
BslFI	GGGAC	2 cut(s)	647, 1059
BslI	CCNNNNNNNGG	6 cut(s)	75, 216, 291, 703, 726, 740
BsmAI	GTCTC	1 cut(s)	738
BsmFI	GGGAC	2 cut(s)	647, 1059
BsmI	GAATGC	2 cut(s)	572, 1216
BsnI	GGCC	4 cut(s)	203, 257, 494, 733
BsoBI	CYCGRG	2 cut(s)	249, 447
Bsp1286I	GDGCHC	3 cut(s)	441, 454, 1265
Bsp1720I	GCTNAGC	2 cut(s)	135, 1068
BspACI	CCGC	4 cut(s)	668, 1037, 1122, 1128
BspANI	GGCC	4 cut(s)	203, 257, 494, 733
BspCNI	CTCAG	2 cut(s)	148, 293
BspFNI	CGCG	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	1047
BspMAI	CTGCAG	1 cut(s)	1142
BspPI	GGATC	3 cut(s)	187, 227, 1280
BsrDI	GCAATG	3 cut(s)	342, 423, 1062
BsrI	ACTGG	4 cut(s)	220, 973, 1247, 1270
BssECI	CCNNGG	4 cut(s)	75, 237, 249, 768
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	5 cut(s)	147, 377, 703, 816, 1050
BstAPI	GCANNNNNTGC	1 cut(s)	1202
BstC8I	GCNNGC	1 cut(s)	1188
BstDEI	CTNAG	4 cut(s)	135, 280, 1068, 1270
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	27, 734
BstFNI	CGCG	1 cut(s)	810
BstHHI	GCGC	2 cut(s)	812, 1174
BstMAI	GTCTC	1 cut(s)	738
BstMWI	GCNNNNNNNGC	8 cut(s)	500, 578, 587, 674, 978, 1180, 1202, 1211
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	2 cut(s)	1079, 1196
BstSCI	CCNGG	8 cut(s)	74, 186, 198, 248, 249, 639, 725, 768
BstSFI	CTRYAG	5 cut(s)	143, 348, 537, 1138, 1311
BstSLI	GKGCMC	1 cut(s)	1265
BstUI	CGCG	1 cut(s)	810
BstV1I	GCAGC	4 cut(s)	388, 748, 956, 1170
BstX2I	RGATCY	2 cut(s)	192, 541
BstXI	CCANNNNNNTGG	1 cut(s)	1229
BstYI	RGATCY	2 cut(s)	192, 541
BsuI	GTATCC	1 cut(s)	727
BsuRI	GGCC	4 cut(s)	203, 257, 494, 733
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	27, 734
BtsI	GCAGTG	1 cut(s)	988
BtsIMutI	CAGTG	7 cut(s)	213, 296, 382, 441, 708, 988, 1263
Cac8I	GCNNGC	1 cut(s)	1188
CfoI	GCGC	2 cut(s)	812, 1174
Cfr13I	GGNCC	2 cut(s)	689, 1046
Cfr9I	CCCGGG	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	361, 389, 548
CviAII	CATG	6 cut(s)	490, 646, 835, 1076, 1193, 1229
CviQI	GTAC	3 cut(s)	361, 389, 548
DdeI	CTNAG	4 cut(s)	135, 280, 1068, 1270
DraI	TTTAAA	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	3 cut(s)	255, 492, 731
Eco147I	AGGCCT	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	689, 1046
Eco57I	CTGAAG	2 cut(s)	504, 1079
Eco88I	CYCGRG	2 cut(s)	249, 447
EcoRII	CCWGG	1 cut(s)	198
EcoT22I	ATGCAT	3 cut(s)	613, 1198, 1230
FaeI	CATG	6 cut(s)	493, 649, 838, 1079, 1196, 1232
FaqI	GGGAC	2 cut(s)	647, 1059
FatI	CATG	6 cut(s)	489, 645, 834, 1075, 1192, 1228
FauNDI	CATATG	1 cut(s)	1201
FbaI	TGATCA	2 cut(s)	379, 603
Fnu4HI	GCNGC	4 cut(s)	402, 762, 970, 1184
FokI	GGATG	2 cut(s)	14, 721
Fsp4HI	GCNGC	4 cut(s)	402, 762, 970, 1184
FspBI	CTAG	2 cut(s)	680, 845
GlaI	GCGC	2 cut(s)	811, 1173
GluI	GCNGC	4 cut(s)	402, 762, 970, 1184
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	4 cut(s)	203, 257, 494, 733
HapII	CCGG	7 cut(s)	75, 188, 250, 641, 697, 726, 770
HhaI	GCGC	2 cut(s)	812, 1174
Hin1II	CATG	6 cut(s)	493, 649, 838, 1079, 1196, 1232
Hin6I	GCGC	2 cut(s)	810, 1172
HinP1I	GCGC	2 cut(s)	810, 1172
HinfI	GANTC	1 cut(s)	722
HpaII	CCGG	7 cut(s)	75, 188, 250, 641, 697, 726, 770
HphI	GGTGA	4 cut(s)	374, 947, 998, 1031
Hpy166II	GTNNAC	3 cut(s)	150, 961, 1135
Hpy188I	TCNGA	4 cut(s)	83, 104, 271, 721
Hpy188III	TCNNGA	2 cut(s)	469, 845
Hpy8I	GTNNAC	3 cut(s)	150, 961, 1135
Hpy99I	CGWCG	1 cut(s)	1054
HpyAV	CCTTC	8 cut(s)	32, 214, 325, 528, 886, 890, 1081, 1227
HpyCH4III	ACNGT	5 cut(s)	147, 377, 703, 816, 1050
HpyF10VI	GCNNNNNNNGC	8 cut(s)	500, 578, 587, 674, 978, 1180, 1202, 1211
HpyF3I	CTNAG	4 cut(s)	135, 280, 1068, 1270
Hsp92II	CATG	6 cut(s)	493, 649, 838, 1079, 1196, 1232
HspAI	GCGC	2 cut(s)	810, 1172
Ksp22I	TGATCA	2 cut(s)	379, 603
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	4 cut(s)	388, 748, 956, 1170
LweI	GCATC	4 cut(s)	643, 664, 1205, 1215
MaeI	CTAG	2 cut(s)	680, 845
MaeIII	GTNAC	2 cut(s)	1250, 1273
MflI	RGATCY	2 cut(s)	192, 541
MhlI	GDGCHC	3 cut(s)	441, 454, 1265
MlsI	TGGCCA	3 cut(s)	257, 494, 733
MluCI	AATT	4 cut(s)	84, 171, 756, 1246
MluNI	TGGCCA	3 cut(s)	257, 494, 733
MmeI	TCCRAC	4 cut(s)	61, 234, 843, 1086
Mox20I	TGGCCA	3 cut(s)	257, 494, 733
Mph1103I	ATGCAT	3 cut(s)	613, 1198, 1230
MscI	TGGCCA	3 cut(s)	257, 494, 733
MseI	TTAA	5 cut(s)	47, 87, 879, 930, 1318
MslI	CAYNNNNRTG	1 cut(s)	1080
Msp20I	TGGCCA	3 cut(s)	257, 494, 733
MspI	CCGG	7 cut(s)	75, 188, 250, 641, 697, 726, 770
MspR9I	CCNGG	8 cut(s)	76, 188, 200, 250, 251, 641, 727, 770
Mva1269I	GAATGC	2 cut(s)	572, 1216
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	810
MwoI	GCNNNNNNNGC	8 cut(s)	500, 578, 587, 674, 978, 1180, 1202, 1211
NciI	CCSGG	7 cut(s)	76, 188, 250, 251, 641, 727, 770
NdeI	CATATG	1 cut(s)	1201
NlaIII	CATG	6 cut(s)	493, 649, 838, 1079, 1196, 1232
NlaIV	GGNNCC	1 cut(s)	1047
NmuCI	GTSAC	1 cut(s)	1250
NsiI	ATGCAT	3 cut(s)	613, 1198, 1230
NspI	RCATGY	2 cut(s)	1079, 1196
PceI	AGGCCT	1 cut(s)	203
PctI	GAATGC	2 cut(s)	572, 1216
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	4 cut(s)	403, 763, 971, 1185
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	1047
PspPI	GGNCC	2 cut(s)	689, 1046
PstI	CTGCAG	1 cut(s)	1142
PsuI	RGATCY	2 cut(s)	192, 541
RsaI	GTAC	3 cut(s)	362, 390, 549
RsaNI	GTAC	3 cut(s)	361, 389, 548
RseI	CAYNNNNRTG	1 cut(s)	1080
SaqAI	TTAA	5 cut(s)	47, 87, 879, 930, 1318
SatI	GCNGC	4 cut(s)	402, 762, 970, 1184
Sau96I	GGNCC	2 cut(s)	689, 1046
ScaI	AGTACT	1 cut(s)	390
ScrFI	CCNGG	8 cut(s)	76, 188, 200, 250, 251, 641, 727, 770
SduI	GDGCHC	3 cut(s)	441, 454, 1265
SfaNI	GCATC	4 cut(s)	643, 664, 1205, 1215
SfcI	CTRYAG	5 cut(s)	143, 348, 537, 1138, 1311
SinI	GGWCC	2 cut(s)	689, 1046
SmaI	CCCGGG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	1080
SmlI	CTYRAG	1 cut(s)	964
SmoI	CTYRAG	1 cut(s)	964
Sse9I	AATT	4 cut(s)	84, 171, 756, 1246
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	4 cut(s)	668, 1037, 1122, 1128
SspMI	CTAG	2 cut(s)	680, 845
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	8 cut(s)	74, 186, 198, 248, 249, 639, 725, 768
TaaI	ACNGT	5 cut(s)	147, 377, 703, 816, 1050
TaqI	TCGA	3 cut(s)	222, 456, 804
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	4 cut(s)	84, 171, 756, 1246
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	5 cut(s)	47, 87, 879, 930, 1318
Tru9I	TTAA	5 cut(s)	47, 87, 879, 930, 1318
TscAI	CASTG	7 cut(s)	220, 296, 382, 441, 708, 988, 1270
TseFI	GTSAC	1 cut(s)	1250
TseI	GCWGC	4 cut(s)	401, 761, 969, 1183
Tsp45I	GTSAC	1 cut(s)	1250
TspDTI	ATGAA	6 cut(s)	31, 307, 768, 851, 1167, 1223
TspMI	CCCGGG	1 cut(s)	249
TspRI	CASTG	7 cut(s)	220, 296, 382, 441, 708, 988, 1270
VpaK11BI	GGWCC	2 cut(s)	689, 1046
XapI	RAATTY	1 cut(s)	171
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	2 cut(s)	1079, 1196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	980
XmaI	CCCGGG	1 cut(s)	249
XspI	CTAG	2 cut(s)	680, 845
ZrmI	AGTACT	1 cut(s)	390
Zsp2I	ATGCAT	3 cut(s)	613, 1198, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.