RchiOBHm_Chr7g0217041

GMP synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
34950797 .. 34954288
3492 bp
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UTR
Exon/CDS
Intron
PRQ19422

Sequence Viewer

Length: 291 bp
ATGTTCTCAGCTTCGCCCCCGATATCTGAGAAGCAGGAGTATGGGAAGATGGAGATTGTGGTGGAGCGGAATTCGGGAATTTTCGGGTCCAAGAGAGGTTGGGGATTATGGTGGAGTGGAATTCAAGGATGTAAGCCACGTTCCCAAAGGTTATGTCAAGAAGTTCAGAATGCCAACTTCCCAGAATTTAGTCCCAATTCGGGTCGATTTCGAAGTCAAAGGCCAGAGGTTCAAAGACGCCTTCACTTGGAACCCATCTGGTGGAGAGATTTGCAAAGTTTGCTAAATTAA

Protein Analysis

96

Amino Acids

11.26

Weight (kDa)

9.88

Isoelectric Point (pI)

69.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025103)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0265381 RchiOBHm_Chr7g0217041
rosa_laevigata RLG00000030704

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 67
AciI CCGC 1 cut(s) 67
AcsI RAATTY 4 cut(s) 70, 78, 120, 185
AcyI GRCGYC 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 200, 247, 261
AgsI TTSAA 2 cut(s) 125, 233
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AoxI GGCC 1 cut(s) 221
ApoI RAATTY 4 cut(s) 70, 78, 120, 185
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspS9I GGNCC 1 cut(s) 87
AsuII TTCGAA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 87
BccI CCATC 2 cut(s) 43, 263
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 88, 252
Bpu14I TTCGAA 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 238
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 247, 261
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 200, 247, 261
BseMII CTCAG 2 cut(s) 18, 21
BshFI GGCC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 3 cut(s) 200, 247, 261
BsmFI GGGAC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 211
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 2 cut(s) 19, 20
BspLI GGNNCC 2 cut(s) 88, 252
BspT104I TTCGAA 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 280
BstBI TTCGAA 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 7, 27
BstF5I GGATG 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 246
CviJI RGCY 3 cut(s) 11, 136, 223
CviKI_1 RGCY 3 cut(s) 11, 136, 223
DdeI CTNAG 2 cut(s) 7, 27
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 87
EcoRI GAATTC 2 cut(s) 70, 120
EcoRV GATATC 1 cut(s) 24
FaiI YATR 3 cut(s) 42, 109, 154
FaqI GGGAC 1 cut(s) 177
FokI GGATG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 223
HgaI GACGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 28, 168
Hpy188III TCNNGA 2 cut(s) 75, 158
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 7, 27
HpySE526I ACGT 1 cut(s) 139
Hsp92I GRCGYC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 20, 195, 237, 244
MaeII ACGT 1 cut(s) 139
MbiI CCGCTC 1 cut(s) 67
MboII GAAGA 1 cut(s) 58
MluCI AATT 6 cut(s) 70, 78, 120, 185, 196, 286
MnlI CCTC 2 cut(s) 89, 220
MseI TTAA 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 88, 252
NspV TTCGAA 1 cut(s) 211
PctI GAATGC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 88, 252
PspPI GGNCC 1 cut(s) 87
PsrI GAACNNNNNNTAC 2 cut(s) 124, 156
SaqAI TTAA 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 87
SetI ASST 5 cut(s) 13, 100, 142, 152, 231
SfuI TTCGAA 1 cut(s) 211
SinI GGWCC 1 cut(s) 87
Sse9I AATT 6 cut(s) 70, 78, 120, 185, 196, 286
SsiI CCGC 1 cut(s) 67
TaiI ACGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 205, 211
TasI AATT 6 cut(s) 70, 78, 120, 185, 196, 286
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 4 cut(s) 70, 78, 120, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.