RchiOBHm_Chr7g0218841

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
37067240 .. 37067654
415 bp
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UTR
Exon/CDS
Intron
PRQ19590

Sequence Viewer

Length: 174 bp
ATGGATGATGCAAAGAGAATATTCAACGAAATGAGAAATCGAGACGTGGTTTCCTACAATACATTGATTTCAGGGTTTGCGGCTCATGGTCAGGGAATGGAAGCTGTCAAGCTAATGATGAAGATGAAAGACAAATTTATTGAACCAAACCGTGAAACATATATCGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.61

Weight (kDa)

8.09

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 7 - 54 7.8e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 14 - 54 8e-13 PPR repeat family
PPR_1 PF12854 14 - 43 3.2e-07 PPR repeat
PPR PF01535 17 - 45 6.6e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025135)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218841
rosa_samantha Rh7BG313400 Rh7CG339200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 134
AgsI TTSAA 2 cut(s) 25, 143
AjiI CACGTC 1 cut(s) 46
AluBI AGCT 2 cut(s) 104, 112
AluI AGCT 2 cut(s) 104, 112
Alw26I GTCTC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 36
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 46
BseGI GGATG 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BspACI CCGC 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 152
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 10
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 83, 104, 112
CviKI_1 RGCY 3 cut(s) 83, 104, 112
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 1 cut(s) 89
FaiI YATR 3 cut(s) 87, 160, 162
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 1 cut(s) 89
LpnPI CCDG 2 cut(s) 57, 77
MaeII ACGT 1 cut(s) 45
MboII GAAGA 1 cut(s) 133
MluCI AATT 1 cut(s) 134
NlaIII CATG 1 cut(s) 89
PkrI GCNGC 1 cut(s) 82
SatI GCNGC 1 cut(s) 81
SetI ASST 3 cut(s) 48, 106, 114
SgeI CNNG 7 cut(s) 53, 58, 84, 98, 104, 121, 164
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 80
SspI AATATT 1 cut(s) 21
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 134
TauI GCSGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 134, 140
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.