Rh7BG313400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0025135
Physical Location & Seq
Reverse (-)
30311450 .. 30311801
352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG313400.1

Sequence Viewer

Length: 318 bp
ATGGTCAGTGTCATCTCAGCATGTGGGCATCTTGGGGGATTGCAAATAGGAAATTGGGCTGTCAACTTTCTCACAAAACATTATATCAATCTAAGCGTATCAGTATACAATTCTTTGATATTCTTGTACTCTAAATGTGGAAGCATGGATGATGCAAAGAGAATATTCAACGAAATGAGAAAACGAGACGTGGTTTCCTACAATACATTGATCTCAGGGTTTGCGGCTCATGGTCAGGGAATGGAAGCTGTCAAGCTAATGATGAAGATGAAAGAAAAATTTATTGAACCAAACCGTAAAACATATATCGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

105

Amino Acids

11.83

Weight (kDa)

9.52

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 32 - 64 1.5e-07 PPR repeat family
PPR_1 PF12854 32 - 60 4e-06 PPR repeat
PPR PF01535 35 - 64 2.6e-08 PPR repeat
PPR_2 PF13041 62 - 102 1.3e-12 PPR repeat family
PPR_1 PF12854 62 - 91 9.1e-07 PPR repeat
PPR_3 PF13812 62 - 102 1.2e-07 Pentatricopeptide repeat domain
PPR PF01535 65 - 93 1.3e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025135)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218841
rosa_samantha Rh7BG313400 Rh7CG339200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AciI CCGC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 2 cut(s) 169, 287
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 2 cut(s) 248, 256
AluI AGCT 2 cut(s) 248, 256
Alw26I GTCTC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 180
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 190
BmsI GCATC 2 cut(s) 37, 142
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 30, 228
BsmAI GTCTC 1 cut(s) 180
BsmBI CGTCTC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 29, 227
BssMI GATC 1 cut(s) 210
BssNAI GTATAC 1 cut(s) 106
Bst1107I GTATAC 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 16, 92, 214
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 24
BstZ17I GTATAC 1 cut(s) 106
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 21, 145, 230
CviJI RGCY 4 cut(s) 59, 227, 248, 256
CviKI_1 RGCY 4 cut(s) 59, 227, 248, 256
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 3 cut(s) 16, 92, 214
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 3 cut(s) 24, 148, 233
FaiI YATR 7 cut(s) 22, 84, 106, 146, 231, 304, 306
FatI CATG 3 cut(s) 20, 144, 229
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 24, 148, 233
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 64, 106
Hpy188I TCNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 64, 106
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 43, 155
HpyF3I CTNAG 3 cut(s) 16, 92, 214
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 3 cut(s) 24, 148, 233
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 2 cut(s) 201, 221
LweI GCATC 2 cut(s) 37, 142
MaeII ACGT 1 cut(s) 189
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 1 cut(s) 277
MluCI AATT 3 cut(s) 52, 109, 278
NdeII GATC 1 cut(s) 210
NlaIII CATG 3 cut(s) 24, 148, 233
NspI RCATGY 1 cut(s) 24
PkrI GCNGC 1 cut(s) 226
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 210
SetI ASST 3 cut(s) 192, 250, 258
SfaNI GCATC 2 cut(s) 37, 142
Sse9I AATT 3 cut(s) 52, 109, 278
SsiI CCGC 1 cut(s) 224
SspI AATATT 1 cut(s) 165
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 192
TasI AATT 3 cut(s) 52, 109, 278
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 227
TscAI CASTG 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 278, 284
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 24
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.