Rh7CG339200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0025135
Physical Location & Seq
Reverse (-)
37974566 .. 37974886
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG339200.1

Sequence Viewer

Length: 321 bp
ATGGTCAGTGTCATCTCAGCAGCATGTGGGCATCTTGGGGGATTGCAAATAGGAAATTGGGCTATCAACTTTCTCACAAAACATCATATCAATCTAAGCGTATCAGTATACAATTCTTTGATATTCTTGTACTCTAAATGTGGAAGCATGGATGATGCAAAGAGAATATTCAACGAAATGAGAAAACGAGACGTGGTTTCCTACAATACATTGATTTCAGGGTTTGCGGCTCATGGTCAGGGAATGGAAGCTGTCAAGCTAATGATGAAGATGAAAGAAAAATTTATTGAACCAAACCGTGAAACATATATCGGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

106

Amino Acids

11.89

Weight (kDa)

9.23

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 30 - 61 2.6e-06 PPR repeat
PPR_2 PF13041 33 - 65 1.5e-07 PPR repeat family
PPR PF01535 36 - 65 2.6e-08 PPR repeat
PPR_2 PF13041 63 - 103 3.2e-12 PPR repeat family
PPR_1 PF12854 63 - 92 9.2e-07 PPR repeat
PPR_3 PF13812 63 - 103 1.5e-07 Pentatricopeptide repeat domain
PPR PF01535 66 - 94 1.3e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025135)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218841
rosa_samantha Rh7BG313400 Rh7CG339200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 1 cut(s) 131
AgsI TTSAA 2 cut(s) 172, 290
AjiI CACGTC 1 cut(s) 193
AluBI AGCT 2 cut(s) 251, 259
AluI AGCT 2 cut(s) 251, 259
Alw26I GTCTC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 281
BbvI GCAGC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 183
BisI GCNGC 2 cut(s) 21, 228
BlsI GCNGC 2 cut(s) 22, 229
BmgBI CACGTC 1 cut(s) 193
BmsI GCATC 2 cut(s) 40, 145
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 29
BssNAI GTATAC 1 cut(s) 109
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 16, 95
BstF5I GGATG 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 32
BstZ17I GTATAC 1 cut(s) 109
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 130
CviAII CATG 3 cut(s) 24, 148, 233
CviJI RGCY 4 cut(s) 62, 230, 251, 259
CviKI_1 RGCY 4 cut(s) 62, 230, 251, 259
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 2 cut(s) 16, 95
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 3 cut(s) 27, 151, 236
FaiI YATR 7 cut(s) 25, 87, 109, 149, 234, 307, 309
FatI CATG 3 cut(s) 23, 147, 232
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 21, 228
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 21, 228
GluI GCNGC 2 cut(s) 21, 228
Hin1II CATG 3 cut(s) 27, 151, 236
Hpy166II GTNNAC 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 46, 158
HpyF3I CTNAG 2 cut(s) 16, 95
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 3 cut(s) 27, 151, 236
LpnPI CCDG 2 cut(s) 204, 224
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 2 cut(s) 40, 145
MaeII ACGT 1 cut(s) 192
MboII GAAGA 1 cut(s) 280
MluCI AATT 3 cut(s) 55, 112, 281
NlaIII CATG 3 cut(s) 27, 151, 236
NspI RCATGY 1 cut(s) 27
PkrI GCNGC 2 cut(s) 22, 229
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 2 cut(s) 21, 228
SetI ASST 3 cut(s) 195, 253, 261
SfaNI GCATC 2 cut(s) 40, 145
Sse9I AATT 3 cut(s) 55, 112, 281
SsiI CCGC 1 cut(s) 227
SspI AATATT 1 cut(s) 168
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 195
TasI AATT 3 cut(s) 55, 112, 281
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 230
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 281, 287
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.