RchiOBHm_Chr7g0227251

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0022815
Physical Location & Seq
Forward (+)
50574075 .. 50574909
835 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20353

Sequence Viewer

Length: 606 bp
ATGGTTACATACAATACAATGGTTTGTGGTTATTGTTCTCTGCGAAGGGTAGATGAAGCTGTTCACCTCTTTCAACAAATGACACAGGGACAGTGTAAACCCAATGCCATCACTTGCAGTATATTGATAGATGCTTTCTGTAAAGAAGGTAAAATGGACGATGCAGTGTTATTGTTTGATCAAATGCTGGAAAAGGATCCTGAACCTAATGTGGTCACCTATAGTTGTCTGATTGATGGTTATTTTAAATCTGAAAACATGGAAAGTGCCTTTGAACTATATGAAGAGATGCTTCAGAGTATCTCTCCAAATATAGTTAGTTACAGCATCCTCATTGATGGTCTTTGCAAAAGAGGACTGATGAAGAAAGCAGCTCTTGCATTTCATTCTGCTATAAACAGGGGTCTGGTGCCGGATGTAGTAGCATATGGGATCCTGATTCATGGTTACTGCAAGGTTGGAAGAACGGCAGAAGCCATGGCATTGTACGGTCGTATGTTAATAAGTGGAATCATGCCGGATGCTATCATACAAAGGATGATTGCGAAGCACCTTCTTGAAATTCAGTCCCACCAAAATATGAGCGCCCAACCAGATGTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

201

Amino Acids

22.44

Weight (kDa)

5.5

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 2 - 48 4.5e-17 PPR repeat family
PPR_1 PF12854 2 - 28 3.7e-09 PPR repeat
PPR PF01535 2 - 29 5.6e-08 PPR repeat
PPR_long PF17177 17 - 113 4.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 32 - 62 1.1e-11 PPR repeat
PPR PF01535 37 - 65 6.2e-08 PPR repeat
PPR_2 PF13041 38 - 81 2.7e-14 PPR repeat family
PPR_3 PF13812 58 - 113 7.9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 68 - 97 1.7e-10 PPR repeat
PPR_2 PF13041 69 - 117 1.8e-18 PPR repeat family
PPR PF01535 72 - 99 1.1e-07 PPR repeat
PPR_1 PF12854 101 - 124 1.3e-08 PPR repeat
PPR_2 PF13041 103 - 152 2.9e-13 PPR repeat family
PPR_1 PF12854 134 - 166 4.2e-11 PPR repeat
PPR_2 PF13041 138 - 175 1.7e-09 PPR repeat family
PPR PF01535 141 - 171 1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022815)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227251 RchiOBHm_Chr7g0227341
rosa_samantha Rh7AG392300 Rh7CG411400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 409
AclWI GGATC 4 cut(s) 191, 204, 427, 440
AcsI RAATTY 1 cut(s) 561
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 1 cut(s) 488
AgsI TTSAA 3 cut(s) 74, 275, 560
AjuI GAANNNNNNNTTGG 1 cut(s) 582
AluBI AGCT 2 cut(s) 59, 374
AluI AGCT 2 cut(s) 59, 374
AlwI GGATC 4 cut(s) 191, 204, 427, 440
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 587
AsuHPI GGTGA 2 cut(s) 56, 208
BamHI GGATCC 2 cut(s) 196, 432
BanI GGYRCC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 383
BccI CCATC 3 cut(s) 116, 230, 332
BceAI ACGGC 1 cut(s) 483
BclI TGATCA 1 cut(s) 178
BfmI CTRYAG 1 cut(s) 220
BfoI RGCGCY 1 cut(s) 588
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 198, 411, 434
BmsI GCATC 5 cut(s) 121, 151, 279, 336, 511
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BsaJI CCNNGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 4 cut(s) 327, 421, 526, 543
BseXI GCAGC 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 493
BshNI GGYRCC 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 493
BsiSI CCGG 2 cut(s) 413, 518
BslFI GGGAC 2 cut(s) 102, 553
BsmFI GGGAC 2 cut(s) 102, 553
Bsp143I GATC 3 cut(s) 178, 196, 432
Bsp19I CCATGG 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 198, 411, 434
BspPI GGATC 4 cut(s) 191, 204, 427, 440
BspT107I GGYRCC 1 cut(s) 409
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 3 cut(s) 178, 196, 432
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 93, 491
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 377
BstDSI CCRYGG 1 cut(s) 477
BstEII GGTNACC 1 cut(s) 214
BstF5I GGATG 4 cut(s) 327, 421, 526, 543
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 3 cut(s) 181, 199, 435
BstMBI GATC 3 cut(s) 178, 196, 432
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 383
BstX2I RGATCY 2 cut(s) 196, 432
BstYI RGATCY 2 cut(s) 196, 432
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 4 cut(s) 327, 421, 526, 543
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 98, 171
CfoI GCGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 487
CviAII CATG 4 cut(s) 259, 443, 478, 514
CviJI RGCY 3 cut(s) 59, 374, 476
CviKI_1 RGCY 3 cut(s) 59, 374, 476
CviQI GTAC 1 cut(s) 487
DpnI GATC 3 cut(s) 180, 198, 434
DpnII GATC 3 cut(s) 178, 196, 432
DraI TTTAAA 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 4 cut(s) 262, 446, 481, 517
FalI AAGNNNNNCTT 4 cut(s) 276, 308, 360, 392
FaqI GGGAC 2 cut(s) 102, 553
FatI CATG 4 cut(s) 258, 442, 477, 513
FauNDI CATATG 1 cut(s) 427
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 4 cut(s) 314, 428, 533, 550
Fsp4HI GCNGC 1 cut(s) 372
GlaI GCGC 1 cut(s) 586
GluI GCNGC 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 588
HapII CCGG 2 cut(s) 413, 518
HhaI GCGC 1 cut(s) 587
Hin1II CATG 4 cut(s) 262, 446, 481, 517
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HinfI GANTC 2 cut(s) 439, 510
HpaII CCGG 2 cut(s) 413, 518
HphI GGTGA 2 cut(s) 56, 208
Hpy166II GTNNAC 2 cut(s) 64, 98
Hpy188I TCNGA 3 cut(s) 231, 253, 297
Hpy188III TCNNGA 3 cut(s) 200, 436, 557
Hpy8I GTNNAC 2 cut(s) 64, 98
HpyAV CCTTC 3 cut(s) 39, 140, 563
HpyCH4III ACNGT 2 cut(s) 93, 491
HpyCH4V TGCA 5 cut(s) 117, 164, 348, 380, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
Hsp92II CATG 4 cut(s) 262, 446, 481, 517
HspAI GCGC 1 cut(s) 585
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 178, 196, 432
LpnPI CCDG 8 cut(s) 71, 173, 213, 385, 392, 426, 449, 531
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 5 cut(s) 121, 151, 279, 336, 511
MaeIII GTNAC 4 cut(s) 4, 214, 320, 446
MalI GATC 3 cut(s) 180, 198, 434
MboI GATC 3 cut(s) 178, 196, 432
MboII GAAGA 3 cut(s) 296, 376, 474
MflI RGATCY 2 cut(s) 196, 432
MluCI AATT 1 cut(s) 561
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 3 cut(s) 77, 341, 347
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 2 cut(s) 246, 500
MspI CCGG 2 cut(s) 413, 518
MwoI GCNNNNNNNGC 1 cut(s) 377
NcoI CCATGG 1 cut(s) 477
NdeI CATATG 1 cut(s) 427
NdeII GATC 3 cut(s) 178, 196, 432
NlaIII CATG 4 cut(s) 262, 446, 481, 517
NlaIV GGNNCC 3 cut(s) 198, 411, 434
NmuCI GTSAC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 2 cut(s) 439, 510
PkrI GCNGC 1 cut(s) 373
PspEI GGTNACC 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 198, 411, 434
PsuI RGATCY 2 cut(s) 196, 432
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SaqAI TTAA 2 cut(s) 246, 500
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 3 cut(s) 178, 196, 432
SetI ASST 8 cut(s) 61, 69, 151, 208, 221, 376, 459, 555
SfaNI GCATC 5 cut(s) 121, 151, 279, 336, 511
SfcI CTRYAG 1 cut(s) 220
Sse9I AATT 1 cut(s) 561
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 93, 491
TasI AATT 1 cut(s) 561
TfiI GAWTC 2 cut(s) 439, 510
Tru1I TTAA 2 cut(s) 246, 500
Tru9I TTAA 2 cut(s) 246, 500
TscAI CASTG 2 cut(s) 98, 171
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 5 cut(s) 69, 297, 374, 377, 431
TspRI CASTG 2 cut(s) 98, 171
XapI RAATTY 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.