Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025141

Physical Location & Seq

Genomic Coordinates Reverse (-)

53144396 .. 53145968

Gene Structure 1573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGGGTGTGTCGAACAAGACTCCCCAGTTTCTCAAAATGAACCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCGGACAGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGGCCCTTGTGGAGCAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

45

Amino Acids

4.81

Weight (kDa)

6.04

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 38	2.1e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	5 - 38	1.2e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 38	6.6e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025141)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229591
rosa_multiflora	Rmu_sc0000693.1_g000079 Rmu_sc0014976.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	3 cut(s)	102, 103, 135
BseMI	GCAATG	3 cut(s)	102, 103, 135
BseNI	ACTGG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	74
BsnI	GGCC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	57
BsrDI	GCAATG	3 cut(s)	102, 103, 135
BsrI	ACTGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	109
BstUI	CGCG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	116
CviJI	RGCY	1 cut(s)	117
CviKI_1	RGCY	1 cut(s)	117
FaiI	YATR	1 cut(s)	114
GlaI	GCGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	80
HspAI	GCGC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	38, 72, 87, 96
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	45
MspI	CCGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	116
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	13
SetI	ASST	1 cut(s)	57
SgeI	CNNG	7 cut(s)	28, 37, 71, 86, 95, 120, 132
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.