Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014976.1

Orthogroup ID

OG0025141

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 960

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014976.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

gtgctgcacgctgggaacaccaataagaatggttacaaggcactgattgctgccgagttcagtggtgtcaatgttgagctggtgaaggatttcgagatgggtgtgtcgaataagactcctgagtttctcaaaatgaaccccattgggaaggttcctgtgttggaaacgccggacggtcctgtttttgagagcagtgccattgcgcgatatggtgagggctccatgtcaggattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

78

Amino Acids

8.3

Weight (kDa)

5.22

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025141)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229591
rosa_multiflora	Rmu_sc0000693.1_g000079 Rmu_sc0014976.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	4, 50
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	94, 224
AvaII	GGWCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	5, 51
BlsI	GCNGC	2 cut(s)	6, 52
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	153, 220
Bse3DI	GCAATG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	153, 220
BsrDI	GCAATG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	41, 67, 199
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	176
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	2 cut(s)	79, 219
CviKI_1	RGCY	2 cut(s)	79, 219
DdeI	CTNAG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	1 cut(s)	226
FaiI	YATR	2 cut(s)	210, 224
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	5, 51
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	5, 51
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	5, 51
GsaI	CCCAGC	1 cut(s)	15
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	94, 224
Hpy188III	TCNNGA	3 cut(s)	94, 119, 228
HpyAV	CCTTC	2 cut(s)	79, 142
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	65, 132, 168, 183, 192, 213
Lsp1109I	GCAGC	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	89
MspI	CCGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	153, 220
NmeAIII	GCCGAG	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	6, 52
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	153, 220
PspPI	GGNCC	1 cut(s)	176
SatI	GCNGC	2 cut(s)	5, 51
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	2 cut(s)	81, 153
SinI	GGWCC	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	93, 107
TscAI	CASTG	3 cut(s)	48, 67, 199
TseI	GCWGC	2 cut(s)	4, 50
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	3 cut(s)	48, 67, 199
VpaK11BI	GGWCC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.