Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000693.1

Orthogroup ID

OG0025141

Physical Location & Seq

Genomic Coordinates Reverse (-)

389585 .. 395497

Gene Structure 5913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000693.1_g000079.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgtccggtttccggcgatttccggccggattctttggggcttttggttgttggggaagtactgaacgtgttcctaaccttgttgcagctcgttttgatcggtatagaaatggttgtgtgggttatgaagttgattttggaatagataggttgtttggacgtactgagccctcgagcaaggaggacacaggcaggcagcaggactacagctcggttggcagtcccatccgaagtgtcatctggttagcagtcccttccagatggcttgaggtagttagtcgtctaggtaataatctggtcggcagtcccgttcagactacagctcggttggcagtcccatccgaagtgtcatctggttggcagtcccttccagatgacttgagatttcagattagccgagattgcgtccaggctcaaggactttggaaatcagcgcttccgtttttgttcgtgctgcacgctgggaacaccaataagaatggctacaaggcacttattgctgctgagttcagcggtgtcaatgttgagctggtgaaggatttcgagatgggtgtgtcgaacaagactccccagtttctcaaaatgaaccccattgggaaggttcctgtgttggaaacgccggatagtcctgtttttgagagcaatgccattgcgcgatatggtgagggctcgatcagccgcggagcggagctgggcaaagaagtcgatattggcgacgaagacaaaatgggtttggaaacggagctgaaattggggcaagtcctgcacgttaggtgctccgacgctgtgagcgacgggttcgacaccaagaaaacggcctcgcagagagtgcaccggagcttcacggccttgggtagcctggtgtcgcccctccaccgcgtcgttcgaccatgtggtcaccgtctgggtagttgtgttagtaaccgccattctcggagcaaaaaaagaagcggccacataagcaaaattgtggagctttccagggatttcaataaggcaatacgacggcgtattggtggcattggagattcgaccagagaaaatcgcaggtttgggccggtctccctccacactctttctcagggcaccctcctcatcctctctctccacccctccttcaaatcaactcctccaaccacttcccccaatctatccttgaaatcactgttgatctccaccaacaccaacatccccgtcatcgatctcttcacctcgcgaaacctaaccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

410

Amino Acids

45.04

Weight (kDa)

9.76

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025141)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229591
rosa_multiflora	Rmu_sc0000693.1_g000079 Rmu_sc0014976.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	1038
AccB1I	GGYRCC	1 cut(s)	1085
AccBSI	CCGCTC	1 cut(s)	686
AccII	CGCG	4 cut(s)	655, 681, 879, 1216
AciI	CCGC	7 cut(s)	513, 679, 681, 686, 877, 925, 951
AcoI	YGGCCR	2 cut(s)	24, 952
AfaI	GTAC	2 cut(s)	61, 163
AfeI	AGCGCT	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	12, 685
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	991, 1120, 1159
AjnI	CCWGG	3 cut(s)	408, 858, 980
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 693, 725
AluBI	AGCT	8 cut(s)	89, 210, 323, 529, 691, 745, 840, 976
AluI	AGCT	8 cut(s)	89, 210, 323, 529, 691, 745, 840, 976
Alw21I	GWGCWC	2 cut(s)	779, 834
Alw26I	GTCTC	1 cut(s)	1066
Alw44I	GTGCAC	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	172
Aor51HI	AGCGCT	1 cut(s)	435
AoxI	GGCC	5 cut(s)	24, 816, 846, 952, 1055
ApaLI	GTGCAC	1 cut(s)	830
ApeKI	GCWGC	4 cut(s)	86, 196, 454, 500
Asp700I	GAANNNNTTC	2 cut(s)	69, 539
AspLEI	GCGC	2 cut(s)	436, 655
AspS9I	GGNCC	1 cut(s)	1055
AsuHPI	GGTGA	4 cut(s)	544, 674, 890, 1201
AvaI	CYCGRG	1 cut(s)	172
BaeGI	GKGCMC	2 cut(s)	834, 1088
BanI	GGYRCC	1 cut(s)	1085
BanII	GRGCYC	2 cut(s)	171, 671
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	2 cut(s)	779, 834
BbvI	GCAGC	4 cut(s)	98, 208, 441, 487
BccI	CCATC	4 cut(s)	233, 255, 346, 541
BceAI	ACGGC	3 cut(s)	831, 861, 1022
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	3 cut(s)	410, 860, 982
BcoDI	GTCTC	1 cut(s)	1066
BfaI	CTAG	2 cut(s)	284, 1231
BfmI	CTRYAG	2 cut(s)	205, 318
BfoI	RGCGCY	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	1038
BisI	GCNGC	6 cut(s)	87, 197, 455, 501, 679, 952
BlsI	GCNGC	6 cut(s)	88, 198, 456, 502, 680, 953
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	410, 860, 982
BmeT110I	CYCGRG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	1055
BmiI	GGNNCC	2 cut(s)	603, 1087
BmrFI	CCNGG	3 cut(s)	410, 860, 982
BmrI	ACTGGG	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	726
BpuEI	CTTGAG	3 cut(s)	287, 399, 400
Bsa29I	ATCGAT	1 cut(s)	1200
BsaI	GGTCTC	1 cut(s)	1066
BsaJI	CCNNGG	3 cut(s)	679, 849, 981
BsaWI	WCCGGW	2 cut(s)	5, 834
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 685
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	1 cut(s)	571
Bse3DI	GCAATG	2 cut(s)	648, 649
BseBI	CCWGG	3 cut(s)	410, 860, 982
BseCI	ATCGAT	1 cut(s)	1200
BseDI	CCNNGG	3 cut(s)	679, 849, 981
BseGI	GGATG	4 cut(s)	225, 338, 1095, 1188
BseLI	CCNNNNNNNGG	2 cut(s)	12, 685
BseMI	GCAATG	2 cut(s)	648, 649
BseMII	CTCAG	3 cut(s)	156, 495, 1094
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	2 cut(s)	1082, 1119
BseSI	GKGCMC	2 cut(s)	834, 1088
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	98, 208, 441, 487
BseYI	CCCAGC	2 cut(s)	461, 691
BsgI	GTGCAG	2 cut(s)	440, 749
Bsh1236I	CGCG	4 cut(s)	655, 681, 879, 1216
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	5 cut(s)	26, 818, 848, 954, 1057
BshNI	GGYRCC	1 cut(s)	1085
BshVI	ATCGAT	1 cut(s)	1200
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	779, 834
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	7 cut(s)	6, 13, 23, 27, 620, 835, 1058
BslFI	GGGAC	5 cut(s)	207, 236, 291, 320, 349
BslI	CCNNNNNNNGG	2 cut(s)	12, 685
BsmAI	GTCTC	1 cut(s)	1066
BsmFI	GGGAC	5 cut(s)	207, 236, 291, 320, 349
BsnI	GGCC	5 cut(s)	26, 818, 848, 954, 1057
Bso31I	GGTCTC	1 cut(s)	1066
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	5 cut(s)	171, 671, 779, 834, 1088
Bsp143I	GATC	4 cut(s)	97, 672, 1170, 1201
Bsp68I	TCGCGA	1 cut(s)	1216
BspACI	CCGC	7 cut(s)	513, 679, 681, 686, 877, 925, 951
BspANI	GGCC	5 cut(s)	26, 818, 848, 954, 1057
BspCNI	CTCAG	3 cut(s)	157, 496, 1093
BspDI	ATCGAT	1 cut(s)	1200
BspFNI	CGCG	4 cut(s)	655, 681, 879, 1216
BspLI	GGNNCC	2 cut(s)	603, 1087
BspMI	ACCTGC	1 cut(s)	1038
BspT107I	GGYRCC	1 cut(s)	1085
BspTNI	GGTCTC	1 cut(s)	1066
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	648, 649
BsrFI	RCCGGY	1 cut(s)	1057
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	1057
BssECI	CCNNGG	3 cut(s)	679, 849, 981
BssMI	GATC	4 cut(s)	97, 672, 1170, 1201
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	3 cut(s)	410, 860, 982
Bst4CI	ACNGT	2 cut(s)	902, 1167
Bst6I	CTCTTC	1 cut(s)	1211
BstAPI	GCANNNNNTGC	3 cut(s)	497, 763, 829
BstC8I	GCNNGC	2 cut(s)	194, 459
BstDEI	CTNAG	3 cut(s)	165, 504, 1080
BstDSI	CCRYGG	1 cut(s)	679
BstEII	GGTNACC	1 cut(s)	896
BstF5I	GGATG	4 cut(s)	225, 338, 1095, 1188
BstFNI	CGCG	4 cut(s)	655, 681, 879, 1216
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	436, 655
BstKTI	GATC	4 cut(s)	100, 675, 1173, 1204
BstMAI	GTCTC	1 cut(s)	1066
BstMBI	GATC	4 cut(s)	97, 672, 1170, 1201
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	8 cut(s)	216, 329, 402, 497, 675, 763, 829, 960
BstNI	CCWGG	3 cut(s)	410, 860, 982
BstPI	GGTNACC	1 cut(s)	896
BstSCI	CCNGG	3 cut(s)	408, 858, 980
BstSFI	CTRYAG	2 cut(s)	205, 318
BstSLI	GKGCMC	2 cut(s)	834, 1088
BstUI	CGCG	4 cut(s)	655, 681, 879, 1216
BstV1I	GCAGC	4 cut(s)	98, 208, 441, 487
BstV2I	GAAGAC	1 cut(s)	726
BstZI	CGGCCG	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	1200
BsuRI	GGCC	5 cut(s)	26, 818, 848, 954, 1057
BsuTUI	ATCGAT	1 cut(s)	1200
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	4 cut(s)	225, 338, 1095, 1188
BtsIMutI	CAGTG	1 cut(s)	1163
BtuMI	TCGCGA	1 cut(s)	1216
BveI	ACCTGC	1 cut(s)	1038
Cac8I	GCNNGC	2 cut(s)	194, 459
CfoI	GCGC	2 cut(s)	436, 655
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	1 cut(s)	1055
Cfr42I	CCGCGG	1 cut(s)	682
ClaI	ATCGAT	1 cut(s)	1200
CseI	GACGC	3 cut(s)	394, 791, 868
Csp6I	GTAC	2 cut(s)	60, 162
CviAII	CATG	1 cut(s)	891
CviQI	GTAC	2 cut(s)	60, 162
DdeI	CTNAG	3 cut(s)	165, 504, 1080
DpnI	GATC	4 cut(s)	99, 674, 1172, 1203
DpnII	GATC	4 cut(s)	97, 672, 1170, 1201
DrdI	GACNNNNNNGTC	1 cut(s)	894
DseDI	GACNNNNNNGTC	1 cut(s)	894
EaeI	YGGCCR	2 cut(s)	24, 952
EagI	CGGCCG	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	1211
EarI	CTCTTC	1 cut(s)	1211
EclXI	CGGCCG	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	2 cut(s)	171, 671
Eco31I	GGTCTC	1 cut(s)	1066
Eco47III	AGCGCT	1 cut(s)	435
Eco52I	CGGCCG	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	896
EcoO65I	GGTNACC	1 cut(s)	896
EcoRII	CCWGG	3 cut(s)	408, 858, 980
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	2 cut(s)	171, 671
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	1 cut(s)	894
FaiI	YATR	5 cut(s)	105, 126, 660, 892, 959
FaqI	GGGAC	5 cut(s)	207, 236, 291, 320, 349
FatI	CATG	1 cut(s)	890
Fnu4HI	GCNGC	6 cut(s)	87, 197, 455, 501, 679, 952
FokI	GGATG	4 cut(s)	212, 325, 1082, 1175
FriOI	GRGCYC	2 cut(s)	171, 671
Fsp4HI	GCNGC	6 cut(s)	87, 197, 455, 501, 679, 952
FspBI	CTAG	2 cut(s)	284, 1231
GlaI	GCGC	2 cut(s)	435, 654
GluI	GCNGC	6 cut(s)	87, 197, 455, 501, 679, 952
GsaI	CCCAGC	2 cut(s)	465, 695
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	5 cut(s)	26, 818, 848, 954, 1057
HapII	CCGG	7 cut(s)	6, 13, 23, 27, 620, 835, 1058
HgaI	GACGC	3 cut(s)	394, 791, 868
HhaI	GCGC	2 cut(s)	436, 655
Hin1II	CATG	1 cut(s)	894
Hin6I	GCGC	2 cut(s)	434, 653
HinP1I	GCGC	2 cut(s)	434, 653
HinfI	GANTC	3 cut(s)	30, 565, 1028
HpaII	CCGG	7 cut(s)	6, 13, 23, 27, 620, 835, 1058
HphI	GGTGA	4 cut(s)	544, 674, 890, 1201
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	6 cut(s)	230, 315, 343, 390, 781, 936
Hpy188III	TCNNGA	4 cut(s)	258, 371, 544, 1215
Hpy8I	GTNNAC	1 cut(s)	832
Hpy99I	CGWCG	5 cut(s)	719, 785, 797, 884, 1008
HpyAV	CCTTC	5 cut(s)	264, 377, 529, 592, 1126
HpyCH4III	ACNGT	2 cut(s)	902, 1167
HpyCH4IV	ACGT	3 cut(s)	67, 160, 768
HpyCH4V	TGCA	4 cut(s)	86, 457, 766, 832
HpyF10VI	GCNNNNNNNGC	8 cut(s)	216, 329, 402, 497, 675, 763, 829, 960
HpyF3I	CTNAG	3 cut(s)	165, 504, 1080
HpySE526I	ACGT	3 cut(s)	67, 160, 768
Hsp92II	CATG	1 cut(s)	894
HspAI	GCGC	2 cut(s)	434, 653
KspI	CCGCGG	1 cut(s)	682
Kzo9I	GATC	4 cut(s)	97, 672, 1170, 1201
LmnI	GCTCC	7 cut(s)	683, 688, 742, 782, 837, 936, 973
Lsp1109I	GCAGC	4 cut(s)	98, 208, 441, 487
MaeI	CTAG	2 cut(s)	284, 1231
MaeII	ACGT	3 cut(s)	67, 160, 768
MaeIII	GTNAC	2 cut(s)	896, 920
MalI	GATC	4 cut(s)	99, 674, 1172, 1203
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	4 cut(s)	97, 672, 1170, 1201
MboII	GAAGA	2 cut(s)	731, 1198
MhlI	GDGCHC	5 cut(s)	171, 671, 779, 834, 1088
MluCI	AATT	2 cut(s)	749, 966
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	3 cut(s)	591, 804, 1157
MroXI	GAANNNNTTC	2 cut(s)	69, 539
MspA1I	CMGCKG	2 cut(s)	513, 681
MspI	CCGG	7 cut(s)	6, 13, 23, 27, 620, 835, 1058
MspR9I	CCNGG	3 cut(s)	410, 860, 982
MvaI	CCWGG	3 cut(s)	410, 860, 982
MvnI	CGCG	4 cut(s)	655, 681, 879, 1216
MwoI	GCNNNNNNNGC	8 cut(s)	216, 329, 402, 497, 675, 763, 829, 960
NdeII	GATC	4 cut(s)	97, 672, 1170, 1201
NlaIII	CATG	1 cut(s)	894
NlaIV	GGNNCC	2 cut(s)	603, 1087
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	896
NruI	TCGCGA	1 cut(s)	1216
PaeR7I	CTCGAG	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	3 cut(s)	306, 711, 789
PdmI	GAANNNNTTC	2 cut(s)	69, 539
PfeI	GAWTC	2 cut(s)	30, 1028
PkrI	GCNGC	6 cut(s)	88, 198, 456, 502, 680, 953
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	3 cut(s)	408, 858, 980
PspEI	GGTNACC	1 cut(s)	896
PspFI	CCCAGC	2 cut(s)	461, 691
PspGI	CCWGG	3 cut(s)	408, 858, 980
PspN4I	GGNNCC	2 cut(s)	603, 1087
PspPI	GGNCC	1 cut(s)	1055
PspXI	VCTCGAGB	1 cut(s)	172
RruI	TCGCGA	1 cut(s)	1216
RsaI	GTAC	2 cut(s)	61, 163
RsaNI	GTAC	2 cut(s)	60, 162
SacII	CCGCGG	1 cut(s)	682
SatI	GCNGC	6 cut(s)	87, 197, 455, 501, 679, 952
Sau3AI	GATC	4 cut(s)	97, 672, 1170, 1201
Sau96I	GGNCC	1 cut(s)	1055
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	3 cut(s)	410, 860, 982
SduI	GDGCHC	5 cut(s)	171, 671, 779, 834, 1088
SfcI	CTRYAG	2 cut(s)	205, 318
Sfr274I	CTCGAG	1 cut(s)	172
Sfr303I	CCGCGG	1 cut(s)	682
SgrBI	CCGCGG	1 cut(s)	682
SlaI	CTCGAG	1 cut(s)	172
SmlI	CTYRAG	4 cut(s)	172, 266, 379, 414
SmoI	CTYRAG	4 cut(s)	172, 266, 379, 414
Sse9I	AATT	2 cut(s)	749, 966
SsiI	CCGC	7 cut(s)	513, 679, 681, 686, 877, 925, 951
SspMI	CTAG	2 cut(s)	284, 1231
StyD4I	CCNGG	3 cut(s)	408, 858, 980
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	902, 1167
TaiI	ACGT	3 cut(s)	70, 163, 771
TaqI	TCGA	9 cut(s)	173, 543, 557, 671, 705, 801, 886, 1031, 1200
TasI	AATT	2 cut(s)	749, 966
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	2 cut(s)	681, 954
TfiI	GAWTC	2 cut(s)	30, 1028
TscAI	CASTG	1 cut(s)	1170
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	4 cut(s)	86, 196, 454, 500
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	2 cut(s)	141, 599
TspGWI	ACGGA	2 cut(s)	429, 755
TspRI	CASTG	1 cut(s)	1170
VneI	GTGCAC	1 cut(s)	830
XhoI	CTCGAG	1 cut(s)	172
XmnI	GAANNNNTTC	2 cut(s)	69, 539
XspI	CTAG	2 cut(s)	284, 1231
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.