RchiOBHm_Chr7g0237201

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
62241307 .. 62241622
316 bp
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UTR
Exon/CDS
Intron
PRQ21257

Sequence Viewer

Length: 213 bp
ATGTACCTTCTATGCCTGAAAGTCCAACTTCTGGTTTTATCAACTTTCTTTGTTTTTATTTGTACCATGACAGCGTCTGGATTTTGTGGTCTGTTTGATTATGCAGGTTTTGGATGCACCGATCAGTTTATGGCCAGACGATTTTATGGTCTCTTTGATTCTGCAGGTTTTGGAAGACATTTTGGATCATTTCAAGATTATATGATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.0

Weight (kDa)

5.57

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022813)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0237191 RchiOBHm_Chr7g0237201
rosa_rugosa Rorug04G0017400
rosa_samantha Rh7DG283800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 95, 155
AccB7I CCANNNNNTGG 1 cut(s) 31
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 2 cut(s) 5, 64
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 2 cut(s) 95, 155
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 31
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 121, 185
BspANI GGCC 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 2 cut(s) 95, 155
BspPI GGATC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 155
BssMI GATC 2 cut(s) 121, 185
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 2 cut(s) 124, 188
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 121, 185
BstSFI CTRYAG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 119
BveI ACCTGC 2 cut(s) 95, 155
CaiI CAGNNNCTG 1 cut(s) 77
CseI GACGC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 4, 63
CviAII CATG 1 cut(s) 67
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
CviQI GTAC 2 cut(s) 4, 63
DpnI GATC 2 cut(s) 123, 187
DpnII GATC 2 cut(s) 121, 185
EaeI YGGCCR 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 155
FaeI CATG 1 cut(s) 70
FaiI YATR 7 cut(s) 13, 68, 102, 131, 147, 201, 203
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 1 cut(s) 66
FokI GGATG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 134
HgaI GACGC 1 cut(s) 63
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 78, 194
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 104, 117, 164
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 121, 185
LpnPI CCDG 6 cut(s) 17, 29, 63, 90, 148, 150
LweI GCATC 1 cut(s) 104
MalI GATC 2 cut(s) 123, 187
MboI GATC 2 cut(s) 121, 185
MboII GAAGA 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 134
MluNI TGGCCA 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 49
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
NdeII GATC 2 cut(s) 121, 185
NlaIII CATG 1 cut(s) 70
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 31
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 73
RsaI GTAC 2 cut(s) 5, 64
RsaNI GTAC 2 cut(s) 4, 63
Sau3AI GATC 2 cut(s) 121, 185
SetI ASST 3 cut(s) 9, 109, 169
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 1 cut(s) 162
SgeI CNNG 8 cut(s) 28, 44, 79, 90, 117, 147, 177, 206
TfiI GAWTC 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 73
Van91I CCANNNNNTGG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.