RCHIOBHM_MTG0498891

cytochrome c oxidase subunit 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0014931
Physical Location & Seq
Reverse (-)
197126 .. 197923
798 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15644

Sequence Viewer

Length: 798 bp
ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCGGGTTCACTTGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAAGGGGGTGCAACACTTCTCAGTTTGGGCCTCATATTTATCCTATATACCATGTTCGTATGGTGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGCTGTACAATTAGGACTTCGATATGGTTTTATTCCGTTCATCGTATCGGAGGTTATGTTCCTTTTTGCTTTTTTTCGGGCTTCTTCTCATTCTTCTTTGGCACCTACGGTAGAGATCGGAGGTATTTGGCCCCCAAAAGGGATTGGGGTTTTAGATCCTCGGGAAATCCCTTTTCTTAATACCCCTATTCTCCTTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCAGTTTACGCTTTAGTAGCTACCGTTTCACTGGCTCTCGTATTCACAGGCTTTCAAGGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTTTTCTTAGCAACTGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATCATATGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACGTGGTTCGGTTATTCCCATTTGTCTCTATCTATTGGTGGGGAGGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX3

Protein Analysis

265

Amino Acids

29.53

Weight (kDa)

6.92

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX3 PF00510 7 - 263 1.7e-109 Cytochrome c oxidase subunit III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 744
AccII CGCG 2 cut(s) 186, 467
AccIII TCCGGA 1 cut(s) 428
AciI CCGC 1 cut(s) 467
AclWI GGATC 2 cut(s) 32, 377
AfaI GTAC 4 cut(s) 104, 234, 643, 731
AfiI CCNNNNNNNGG 5 cut(s) 59, 119, 365, 366, 444
AgsI TTSAA 4 cut(s) 8, 119, 539, 716
AjiI CACGTC 1 cut(s) 748
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 5 cut(s) 74, 230, 434, 503, 722
AluI AGCT 5 cut(s) 74, 230, 434, 503, 722
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 2 cut(s) 32, 377
Ama87I CYCGRG 1 cut(s) 387
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 3 cut(s) 50, 145, 356
ApeKI GCWGC 3 cut(s) 434, 719, 722
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 145, 357
AvaI CYCGRG 1 cut(s) 387
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 421, 709, 731
BceAI ACGGC 1 cut(s) 422
BclI TGATCA 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 775
BisI GCNGC 3 cut(s) 435, 720, 723
BlsI GCNGC 3 cut(s) 436, 721, 724
BmeT110I CYCGRG 1 cut(s) 387
BmgBI CACGTC 1 cut(s) 748
BmgT120I GGNCC 2 cut(s) 145, 357
BmiI GGNNCC 2 cut(s) 330, 359
BmsI GCATC 1 cut(s) 709
BsaAI YACGTR 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 47, 386, 693
BsaWI WCCGGW 1 cut(s) 428
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 423, 453
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 119, 365, 366, 444
Bse1I ACTGG 3 cut(s) 519, 616, 737
BseAI TCCGGA 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 47, 386, 693
BseGI GGATG 1 cut(s) 425
BseLI CCNNNNNNNGG 5 cut(s) 59, 119, 365, 366, 444
BseMII CTCAG 2 cut(s) 26, 151
BseNI ACTGG 3 cut(s) 519, 616, 737
BseXI GCAGC 3 cut(s) 421, 709, 731
Bsh1236I CGCG 2 cut(s) 186, 467
BshFI GGCC 3 cut(s) 52, 147, 358
BshNI GGYRCC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 429
BslI CCNNNNNNNGG 5 cut(s) 59, 119, 365, 366, 444
BsmAI GTCTC 1 cut(s) 775
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 3 cut(s) 52, 147, 358
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 451
Bsp13I TCCGGA 1 cut(s) 428
Bsp1407I TGTACA 2 cut(s) 102, 232
Bsp143I GATC 4 cut(s) 37, 342, 382, 654
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 467
BspANI GGCC 3 cut(s) 52, 147, 358
BspCNI CTCAG 2 cut(s) 25, 150
BspEI TCCGGA 1 cut(s) 428
BspFNI CGCG 2 cut(s) 186, 467
BspLI GGNNCC 2 cut(s) 330, 359
BspPI GGATC 2 cut(s) 32, 377
BspT107I GGYRCC 1 cut(s) 328
BsrGI TGTACA 2 cut(s) 102, 232
BsrI ACTGG 3 cut(s) 519, 616, 737
BssECI CCNNGG 3 cut(s) 47, 386, 693
BssMI GATC 4 cut(s) 37, 342, 382, 654
BssT1I CCWWGG 2 cut(s) 47, 693
Bst4CI ACNGT 3 cut(s) 88, 337, 508
BstAUI TGTACA 2 cut(s) 102, 232
BstBAI YACGTR 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 12, 137, 604
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 425
BstFNI CGCG 2 cut(s) 186, 467
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 4 cut(s) 40, 345, 385, 657
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 4 cut(s) 37, 342, 382, 654
BstMWI GCNNNNNNNGC 4 cut(s) 455, 464, 491, 500
BstNSI RCATGY 1 cut(s) 109
BstUI CGCG 2 cut(s) 186, 467
BstV1I GCAGC 3 cut(s) 421, 709, 731
BstX2I RGATCY 2 cut(s) 37, 382
BstXI CCANNNNNNTGG 2 cut(s) 48, 680
BstYI RGATCY 2 cut(s) 37, 382
BsuRI GGCC 3 cut(s) 52, 147, 358
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 748
BtsCI GGATG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 145, 357
Csp6I GTAC 4 cut(s) 103, 233, 642, 730
CviAII CATG 7 cut(s) 48, 106, 169, 455, 620, 629, 726
CviQI GTAC 4 cut(s) 103, 233, 642, 730
DdeI CTNAG 3 cut(s) 12, 137, 604
DpnI GATC 4 cut(s) 39, 344, 384, 656
DpnII GATC 4 cut(s) 37, 342, 382, 654
Eco130I CCWWGG 2 cut(s) 47, 693
Eco24I GRGCYC 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 47, 693
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 2 cut(s) 47, 693
FaeI CATG 7 cut(s) 51, 109, 172, 458, 623, 632, 729
FatI CATG 7 cut(s) 47, 105, 168, 454, 619, 628, 725
FauI CCCGC 1 cut(s) 460
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 3 cut(s) 435, 720, 723
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 3 cut(s) 435, 720, 723
GlaI GCGC 1 cut(s) 185
GluI GCNGC 3 cut(s) 435, 720, 723
HaeIII GGCC 3 cut(s) 52, 147, 358
HapII CCGG 1 cut(s) 429
HhaI GCGC 1 cut(s) 186
Hin1II CATG 7 cut(s) 51, 109, 172, 458, 623, 632, 729
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 2 cut(s) 8, 200
HpaII CCGG 1 cut(s) 429
Hpy166II GTNNAC 3 cut(s) 65, 490, 745
Hpy188I TCNGA 5 cut(s) 15, 277, 347, 577, 690
Hpy188III TCNNGA 3 cut(s) 389, 429, 652
Hpy8I GTNNAC 3 cut(s) 65, 490, 745
HpyAV CCTTC 3 cut(s) 206, 466, 574
HpyCH4III ACNGT 3 cut(s) 88, 337, 508
HpyCH4IV ACGT 4 cut(s) 196, 206, 705, 747
HpyCH4V TGCA 3 cut(s) 109, 128, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 464, 491, 500
HpyF3I CTNAG 3 cut(s) 12, 137, 604
HpySE526I ACGT 4 cut(s) 196, 206, 705, 747
Hsp92II CATG 7 cut(s) 51, 109, 172, 458, 623, 632, 729
HspAI GCGC 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 4 cut(s) 37, 342, 382, 654
LmnI GCTCC 3 cut(s) 71, 431, 697
LpnPI CCDG 5 cut(s) 442, 500, 516, 597, 718
Lsp1109I GCAGC 3 cut(s) 421, 709, 731
LweI GCATC 1 cut(s) 709
MaeII ACGT 4 cut(s) 196, 206, 705, 747
MaeIII GTNAC 1 cut(s) 439
MalI GATC 4 cut(s) 39, 344, 384, 656
MboI GATC 4 cut(s) 37, 342, 382, 654
MboII GAAGA 2 cut(s) 303, 312
MflI RGATCY 2 cut(s) 37, 382
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 9, 86, 158, 271, 341, 396, 782
MroI TCCGGA 1 cut(s) 428
MseI TTAA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 19
MvnI CGCG 2 cut(s) 186, 467
MwoI GCNNNNNNNGC 4 cut(s) 455, 464, 491, 500
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 659
NdeII GATC 4 cut(s) 37, 342, 382, 654
NlaIII CATG 7 cut(s) 51, 109, 172, 458, 623, 632, 729
NlaIV GGNNCC 2 cut(s) 330, 359
NspI RCATGY 1 cut(s) 109
PctI GAATGC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 8, 200
PkrI GCNGC 3 cut(s) 436, 721, 724
Ppu21I YACGTR 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 330, 359
PspPI GGNCC 2 cut(s) 145, 357
PsrI GAACNNNNNNTAC 4 cut(s) 574, 606, 735, 767
PsuI RGATCY 2 cut(s) 37, 382
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 4 cut(s) 104, 234, 643, 731
RsaNI GTAC 4 cut(s) 103, 233, 642, 730
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 3 cut(s) 435, 720, 723
Sau3AI GATC 4 cut(s) 37, 342, 382, 654
Sau96I GGNCC 2 cut(s) 145, 357
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 1 cut(s) 709
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 467
SspI AATATT 1 cut(s) 551
StyI CCWWGG 2 cut(s) 47, 693
TaaI ACNGT 3 cut(s) 88, 337, 508
TaiI ACGT 4 cut(s) 199, 209, 708, 750
TaqI TCGA 1 cut(s) 247
TasI AATT 1 cut(s) 236
TatI WGTACW 2 cut(s) 102, 232
TfiI GAWTC 2 cut(s) 8, 200
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 519
TseI GCWGC 3 cut(s) 434, 719, 722
TspDTI ATGAA 4 cut(s) 256, 414, 608, 617
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 519
XceI RCATGY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.