Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014931

Physical Location & Seq

Genomic Coordinates Forward (+)

1186247 .. 1187654

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCGGGTTCACTTGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAAGGGGGTGCAACACTTCTCAGTTTGGGCCTCATATTTATCCTATATACCATGTTCGTATGGTGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGCTGTACAATTAGGACTTCGATATGGTTTTATTCCGTTCATCGTATCGGAGGTTATGTTCCTTTTTGCTTTTTTTCGGGCTTCTTCTCATTCTTCTTTGGCACCTACGGTAGAGATCGGAGGTATTTGGCCCCCAAAAGGGATTGGGGTTTTAGATCCTCGGGAAATCCCTTTTCTTAATACCCCTATTCTCCTTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCAGTTTACGCTTTAGTAGCTACCGTTTTACTGGCTCTCGTATTCACAGGCTTTCAAGGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTACTCTTTTCTTGATCATATGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACGTGATTGTTCCTTTTAATCGTAATCAAAGATCTTTTCTTGTCTCTCGTTTCTTTTCCGAACAAATCGAAGAACCTAATGGATCGAACTCATCCTTGGCTGCTACGAAACATATCGGCCTTGCGTTGCGGAAGGAACGTTATCTTCTTGGGGTTAGTACTTCACTCCGGGTTCCTTGCGGCGCTGCCTCATGCTTGCGCTTGCTTGAATGCCAGTACGTTACTAGAATAGGTGGTTGGCTGCTGCGTCGCCGGAAGGGTCTTTTCCTTTGCTTGCGTAAGTTACCCTGCTTGCTATTCTATCACCCCTCGCCCGGCCTTTATTTGATTGATAGGGCTCCTTCACCAGAATCAATAGCCCAGCTACACTACCACTACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX3

Protein Analysis

356

Amino Acids

39.81

Weight (kDa)

9.2

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX3	PF00510	7 - 195	2.4e-73	Cytochrome c oxidase subunit III
COX3	PF00510	195 - 232	2.9e-10	Cytochrome c oxidase subunit III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07687 ATMG00730
pyrus_communis	pycom461g00310
rosa_chinensis	RchiOBHm_Chr6g0257961 RchiOBHm_Chr6g0257971 RchiOBHm_MTg0498891 RchiOBHm_MTg0498901
rosa_laevigata	RLG00000000141 RLG00000000155 RLG00000000195 RLG00000000488 RLG00000001027
rosa_samantha	Rh1BG017600 Rh1BG017700 Rh1BG019700 Rh1BG019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	2 cut(s)	186, 467
AccIII	TCCGGA	1 cut(s)	428
AciI	CCGC	3 cut(s)	467, 814, 864
AclI	AACGTT	1 cut(s)	823
AclWI	GGATC	3 cut(s)	32, 377, 775
AfaI	GTAC	6 cut(s)	104, 234, 583, 671, 844, 902
AfiI	CCNNNNNNNGG	6 cut(s)	59, 119, 365, 366, 444, 998
AgsI	TTSAA	5 cut(s)	8, 119, 539, 656, 893
AjiI	CACGTC	1 cut(s)	688
AjuI	GAANNNNNNNTTGG	4 cut(s)	764, 796, 904, 936
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	6 cut(s)	74, 230, 434, 503, 662, 1048
AluI	AGCT	6 cut(s)	74, 230, 434, 503, 662, 1048
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	3 cut(s)	32, 377, 775
Ama87I	CYCGRG	1 cut(s)	387
Aor13HI	TCCGGA	1 cut(s)	428
AoxI	GGCC	5 cut(s)	50, 145, 356, 802, 1000
ApeKI	GCWGC	7 cut(s)	434, 659, 662, 785, 869, 925, 928
AspLEI	GCGC	3 cut(s)	186, 869, 885
AspS9I	GGNCC	2 cut(s)	145, 357
AsuC2I	CCSGG	2 cut(s)	854, 999
AsuHPI	GGTGA	2 cut(s)	980, 1020
AvaI	CYCGRG	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	2 cut(s)	451, 1024
BbvI	GCAGC	7 cut(s)	421, 649, 671, 772, 856, 912, 915
BceAI	ACGGC	1 cut(s)	422
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	2 cut(s)	854, 999
BcoDI	GTCTC	1 cut(s)	733
BfaI	CTAG	1 cut(s)	909
BfoI	RGCGCY	1 cut(s)	870
BglII	AGATCT	1 cut(s)	716
BisI	GCNGC	8 cut(s)	435, 660, 663, 786, 865, 870, 926, 929
BlsI	GCNGC	8 cut(s)	436, 661, 664, 787, 866, 871, 927, 930
BmcAI	AGTACT	2 cut(s)	583, 844
Bme1390I	CCNGG	2 cut(s)	854, 999
BmeT110I	CYCGRG	1 cut(s)	387
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	145, 357
BmiI	GGNNCC	4 cut(s)	330, 359, 858, 1023
BmrFI	CCNGG	2 cut(s)	854, 999
BmsI	GCATC	1 cut(s)	649
BpuMI	CCSGG	2 cut(s)	854, 999
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	47, 386, 633, 780
BsaWI	WCCGGW	1 cut(s)	428
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 423, 453
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 119, 365, 366, 444, 998
Bse1I	ACTGG	3 cut(s)	519, 677, 898
BseAI	TCCGGA	1 cut(s)	428
BseDI	CCNNGG	4 cut(s)	47, 386, 633, 780
BseGI	GGATG	2 cut(s)	425, 776
BseLI	CCNNNNNNNGG	6 cut(s)	59, 119, 365, 366, 444, 998
BseMII	CTCAG	2 cut(s)	26, 151
BseNI	ACTGG	3 cut(s)	519, 677, 898
BseXI	GCAGC	7 cut(s)	421, 649, 671, 772, 856, 912, 915
BseYI	CCCAGC	1 cut(s)	1044
Bsh1236I	CGCG	2 cut(s)	186, 467
BshFI	GGCC	5 cut(s)	52, 147, 358, 804, 1002
BshNI	GGYRCC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	4 cut(s)	429, 853, 937, 999
BslI	CCNNNNNNNGG	6 cut(s)	59, 119, 365, 366, 444, 998
BsmAI	GTCTC	1 cut(s)	733
BsmI	GAATGC	2 cut(s)	19, 899
BsnI	GGCC	5 cut(s)	52, 147, 358, 804, 1002
BsoBI	CYCGRG	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	451, 1024
Bsp13I	TCCGGA	1 cut(s)	428
Bsp1407I	TGTACA	2 cut(s)	102, 232
Bsp143I	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	467, 814, 864
BspANI	GGCC	5 cut(s)	52, 147, 358, 804, 1002
BspCNI	CTCAG	2 cut(s)	25, 150
BspEI	TCCGGA	1 cut(s)	428
BspFNI	CGCG	2 cut(s)	186, 467
BspLI	GGNNCC	4 cut(s)	330, 359, 858, 1023
BspPI	GGATC	3 cut(s)	32, 377, 775
BspT107I	GGYRCC	1 cut(s)	328
BsrGI	TGTACA	2 cut(s)	102, 232
BsrI	ACTGG	3 cut(s)	519, 677, 898
BssECI	CCNNGG	4 cut(s)	47, 386, 633, 780
BssMI	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
BssT1I	CCWWGG	3 cut(s)	47, 633, 780
Bst4CI	ACNGT	3 cut(s)	88, 337, 508
BstAUI	TGTACA	2 cut(s)	102, 232
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	881, 887, 959, 977
BstDEI	CTNAG	2 cut(s)	12, 137
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	425, 776
BstFNI	CGCG	2 cut(s)	186, 467
BstH2I	RGCGCY	1 cut(s)	870
BstHHI	GCGC	3 cut(s)	186, 869, 885
BstKTI	GATC	6 cut(s)	40, 345, 385, 597, 719, 770
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 464, 491, 500
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	852, 997
BstUI	CGCG	2 cut(s)	186, 467
BstV1I	GCAGC	7 cut(s)	421, 649, 671, 772, 856, 912, 915
BstX2I	RGATCY	3 cut(s)	37, 382, 716
BstXI	CCANNNNNNTGG	2 cut(s)	48, 620
BstYI	RGATCY	3 cut(s)	37, 382, 716
BsuRI	GGCC	5 cut(s)	52, 147, 358, 804, 1002
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	425, 776
Cac8I	GCNNGC	4 cut(s)	881, 887, 959, 977
CfoI	GCGC	3 cut(s)	186, 869, 885
Cfr13I	GGNCC	2 cut(s)	145, 357
CseI	GACGC	1 cut(s)	920
Csp6I	GTAC	6 cut(s)	103, 233, 582, 670, 843, 901
CviAII	CATG	6 cut(s)	48, 106, 169, 455, 666, 876
CviQI	GTAC	6 cut(s)	103, 233, 582, 670, 843, 901
DdeI	CTNAG	2 cut(s)	12, 137
DpnI	GATC	6 cut(s)	39, 344, 384, 596, 718, 769
DpnII	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
Eco130I	CCWWGG	3 cut(s)	47, 633, 780
Eco24I	GRGCYC	2 cut(s)	451, 1024
Eco88I	CYCGRG	1 cut(s)	387
EcoT14I	CCWWGG	3 cut(s)	47, 633, 780
EcoT38I	GRGCYC	2 cut(s)	451, 1024
ErhI	CCWWGG	3 cut(s)	47, 633, 780
FaeI	CATG	6 cut(s)	51, 109, 172, 458, 669, 879
FatI	CATG	6 cut(s)	47, 105, 168, 454, 665, 875
FauI	CCCGC	1 cut(s)	460
FauNDI	CATATG	1 cut(s)	599
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	8 cut(s)	435, 660, 663, 786, 865, 870, 926, 929
FokI	GGATG	2 cut(s)	412, 763
FriOI	GRGCYC	2 cut(s)	451, 1024
Fsp4HI	GCNGC	8 cut(s)	435, 660, 663, 786, 865, 870, 926, 929
FspBI	CTAG	1 cut(s)	909
GlaI	GCGC	3 cut(s)	185, 868, 884
GluI	GCNGC	8 cut(s)	435, 660, 663, 786, 865, 870, 926, 929
GsaI	CCCAGC	1 cut(s)	1048
HaeII	RGCGCY	1 cut(s)	870
HaeIII	GGCC	5 cut(s)	52, 147, 358, 804, 1002
HapII	CCGG	4 cut(s)	429, 853, 937, 999
HgaI	GACGC	1 cut(s)	920
HhaI	GCGC	3 cut(s)	186, 869, 885
Hin1II	CATG	6 cut(s)	51, 109, 172, 458, 669, 879
Hin6I	GCGC	3 cut(s)	184, 867, 883
HinP1I	GCGC	3 cut(s)	184, 867, 883
HinfI	GANTC	3 cut(s)	8, 200, 1034
HpaII	CCGG	4 cut(s)	429, 853, 937, 999
HphI	GGTGA	2 cut(s)	980, 1020
Hpy166II	GTNNAC	3 cut(s)	65, 490, 685
Hpy188I	TCNGA	6 cut(s)	15, 277, 347, 577, 630, 745
Hpy188III	TCNNGA	3 cut(s)	389, 429, 592
Hpy8I	GTNNAC	3 cut(s)	65, 490, 685
Hpy99I	CGWCG	1 cut(s)	936
HpyAV	CCTTC	6 cut(s)	206, 466, 574, 811, 934, 1035
HpyCH4III	ACNGT	3 cut(s)	88, 337, 508
HpyCH4IV	ACGT	6 cut(s)	196, 206, 645, 687, 823, 903
HpyCH4V	TGCA	3 cut(s)	109, 128, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 464, 491, 500
HpyF3I	CTNAG	2 cut(s)	12, 137
HpySE526I	ACGT	6 cut(s)	196, 206, 645, 687, 823, 903
Hsp92II	CATG	6 cut(s)	51, 109, 172, 458, 669, 879
HspAI	GCGC	3 cut(s)	184, 867, 883
Kpn2I	TCCGGA	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
LmnI	GCTCC	4 cut(s)	71, 431, 637, 1027
Lsp1109I	GCAGC	7 cut(s)	421, 649, 671, 772, 856, 912, 915
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	6 cut(s)	196, 206, 645, 687, 823, 903
MaeIII	GTNAC	3 cut(s)	439, 904, 966
MalI	GATC	6 cut(s)	39, 344, 384, 596, 718, 769
MboI	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
MboII	GAAGA	4 cut(s)	303, 312, 767, 821
MflI	RGATCY	3 cut(s)	37, 382, 716
MhlI	GDGCHC	2 cut(s)	451, 1024
MluCI	AATT	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	9, 86, 158, 271, 341, 396, 883, 1003
MroI	TCCGGA	1 cut(s)	428
MseI	TTAA	2 cut(s)	405, 702
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	4 cut(s)	429, 853, 937, 999
MspR9I	CCNGG	2 cut(s)	854, 999
Mva1269I	GAATGC	2 cut(s)	19, 899
MvnI	CGCG	2 cut(s)	186, 467
MwoI	GCNNNNNNNGC	4 cut(s)	455, 464, 491, 500
NciI	CCSGG	2 cut(s)	854, 999
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	599
NdeII	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
NlaIII	CATG	6 cut(s)	51, 109, 172, 458, 669, 879
NlaIV	GGNNCC	4 cut(s)	330, 359, 858, 1023
NspI	RCATGY	1 cut(s)	109
PctI	GAATGC	2 cut(s)	19, 899
PfeI	GAWTC	3 cut(s)	8, 200, 1034
PkrI	GCNGC	8 cut(s)	436, 661, 664, 787, 866, 871, 927, 930
Ppu21I	YACGTR	1 cut(s)	197
Psp1406I	AACGTT	1 cut(s)	823
PspFI	CCCAGC	1 cut(s)	1044
PspN4I	GGNNCC	4 cut(s)	330, 359, 858, 1023
PspPI	GGNCC	2 cut(s)	145, 357
PsuI	RGATCY	3 cut(s)	37, 382, 716
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	6 cut(s)	104, 234, 583, 671, 844, 902
RsaNI	GTAC	6 cut(s)	103, 233, 582, 670, 843, 901
SaqAI	TTAA	2 cut(s)	405, 702
SatI	GCNGC	8 cut(s)	435, 660, 663, 786, 865, 870, 926, 929
Sau3AI	GATC	6 cut(s)	37, 342, 382, 594, 716, 767
Sau96I	GGNCC	2 cut(s)	145, 357
ScaI	AGTACT	2 cut(s)	583, 844
ScrFI	CCNGG	2 cut(s)	854, 999
SduI	GDGCHC	2 cut(s)	451, 1024
SfaNI	GCATC	1 cut(s)	649
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	3 cut(s)	467, 814, 864
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	1 cut(s)	909
StyD4I	CCNGG	2 cut(s)	852, 997
StyI	CCWWGG	3 cut(s)	47, 633, 780
TaaI	ACNGT	3 cut(s)	88, 337, 508
TaiI	ACGT	6 cut(s)	199, 209, 648, 690, 826, 906
TaqI	TCGA	3 cut(s)	247, 753, 770
TasI	AATT	1 cut(s)	236
TatI	WGTACW	4 cut(s)	102, 232, 581, 842
TauI	GCSGC	1 cut(s)	867
TfiI	GAWTC	3 cut(s)	8, 200, 1034
Tru1I	TTAA	2 cut(s)	405, 702
Tru9I	TTAA	2 cut(s)	405, 702
TseI	GCWGC	7 cut(s)	434, 659, 662, 785, 869, 925, 928
TspDTI	ATGAA	2 cut(s)	256, 414
TspGWI	ACGGA	1 cut(s)	252
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	1 cut(s)	909
ZrmI	AGTACT	2 cut(s)	583, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.