RLG00000000195

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0014931
Physical Location & Seq
Reverse (-)
878371 .. 881061
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000195

Sequence Viewer

Length: 1005 bp
ATGAATAAGTTGCTCTCATCAACTAATAGTCTCTTTAGTTGCTCTGGACCTAGGGTTTCCCCGTTAAAAAAAATTTTCCTCGTCCGGCGCGTAGCGCGTGCAGCCGGACGAGATCTGGCCTTCATGGTGATGCTTCTCTCTGAGGGCGAGGATGGTGGTGGCCGAGATTGGGACGCTGTTGAGATCGAACCACTCGCTCCCGAGCGGTTCAGATCGGAATTTAGGTCGAGTATGTTGGATGGCCGGTTAGGCAGCAGTGCTTGGCAAGGGATGGATGGGGACAGGCGATCTGGAGGGATGAGATGGAGGTTTAGCGTGGTTGCTGCTACGGCGTCGATCTGCGGTTCTGGGCGCCGGCCCGGTGGTAGTAGATCCAAACCTGTTGGGTCGGGGTTGGGGTTGGGGATCAGGTTGTCTTGGATTGGGGTTATGGGTATTGCCCCTGGATATGGTTGGGATAGGGTGGCCGGAATAGCTGGGCTTTGGGACAATCGGGTTAGCGGGGCGCTGACAGAGGTGATCGTCGGCAGGTGGGAGATCGATGCAGGCGAGGGCGATCTGATGCAGGCGGTGGTGTTTGCAGGTGGTGGTAGGTGTGCAGGCGGTGGTGTTTGTAGGTGGTGGTGGATTGTTCCTTTTAATCGTAATCAAAGATCTTTTCTTGTCTCTCGTTTCTTTTCCGAACAAATCGAAGAACCTAATGGATCGAACTCATCCTTGGCTGCTACGAAACATATCGGCCTTGCGTTGCGGAAGGAACGTTATCTTCTTGGGGTTAGTACTTCACTCCGGGTTCCTTGCGGCGCTGCCTCATGCTTGCGCTTGCTTGAATGCCAGTACGTTACTAGAATAGGTGGTTGGCTGCTGCGTCGCCGGAAGGGTCTTTTCCTTTGCTTGCGTAAGTTACCCTGCTTGCTATTCTATCACCCCTCGCCCGGCCTTTATTTGATTGATAGGGCTCCTTCACCAGAATCAATAGCCCAGCTACACTACCACTACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

36.58

Weight (kDa)

10.0

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 519, 572
Acc36I ACCTGC 2 cut(s) 519, 572
AccB1I GGYRCC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 2 cut(s) 90, 97
AciI CCGC 7 cut(s) 205, 342, 501, 569, 603, 751, 801
AclI AACGTT 1 cut(s) 760
AclWI GGATC 3 cut(s) 366, 413, 712
AcoI YGGCCR 3 cut(s) 160, 241, 465
AcsI RAATTY 2 cut(s) 72, 218
AcyI GRCGYC 2 cut(s) 332, 352
AfaI GTAC 2 cut(s) 781, 839
AfiI CCNNNNNNNGG 3 cut(s) 169, 449, 935
AgsI TTSAA 1 cut(s) 830
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 4 cut(s) 701, 733, 841, 873
AluBI AGCT 2 cut(s) 476, 985
AluI AGCT 2 cut(s) 476, 985
Alw26I GTCTC 2 cut(s) 35, 670
AlwI GGATC 3 cut(s) 366, 413, 712
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 7 cut(s) 117, 160, 241, 356, 465, 739, 937
ApeKI GCWGC 7 cut(s) 101, 252, 323, 722, 806, 862, 865
ApoI RAATTY 2 cut(s) 72, 218
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 6 cut(s) 90, 97, 354, 508, 806, 822
AspS9I GGNCC 2 cut(s) 47, 357
AsuC2I CCSGG 3 cut(s) 360, 791, 936
AsuHPI GGTGA 4 cut(s) 139, 529, 917, 957
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 47
AvrII CCTAGG 1 cut(s) 50
BanI GGYRCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 961
BbvI GCAGC 7 cut(s) 113, 264, 310, 709, 793, 849, 852
BccI CCATC 5 cut(s) 146, 233, 265, 269, 297
BceAI ACGGC 1 cut(s) 345
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 3 cut(s) 360, 791, 936
BcoDI GTCTC 2 cut(s) 35, 670
BfaI CTAG 2 cut(s) 51, 846
BfoI RGCGCY 3 cut(s) 355, 509, 807
BfuAI ACCTGC 2 cut(s) 519, 572
BglI GCCNNNNNGGC 1 cut(s) 249
BglII AGATCT 2 cut(s) 112, 653
BisI GCNGC 8 cut(s) 102, 253, 324, 723, 802, 807, 863, 866
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 8 cut(s) 103, 254, 325, 724, 803, 808, 864, 867
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 4 cut(s) 360, 444, 791, 936
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 47, 357
BmiI GGNNCC 3 cut(s) 353, 795, 960
BmrFI CCNGG 4 cut(s) 360, 444, 791, 936
BmsI GCATC 3 cut(s) 120, 532, 552
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 3 cut(s) 360, 791, 936
Bsa29I ATCGAT 1 cut(s) 540
BsaHI GRCGYC 2 cut(s) 332, 352
BsaJI CCNNGG 3 cut(s) 50, 442, 717
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 449, 935
Bse118I RCCGGY 2 cut(s) 243, 354
Bse1I ACTGG 1 cut(s) 835
BseBI CCWGG 1 cut(s) 444
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 3 cut(s) 50, 442, 717
BseGI GGATG 6 cut(s) 157, 244, 276, 280, 303, 713
BseLI CCNNNNNNNGG 3 cut(s) 169, 449, 935
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 835
BseXI GCAGC 7 cut(s) 113, 264, 310, 709, 793, 849, 852
BseYI CCCAGC 2 cut(s) 476, 981
BsgI GTGCAG 2 cut(s) 120, 618
Bsh1236I CGCG 2 cut(s) 90, 97
BshFI GGCC 7 cut(s) 119, 162, 243, 358, 467, 741, 939
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 9 cut(s) 85, 105, 244, 355, 360, 468, 790, 874, 936
BslFI GGGAC 3 cut(s) 185, 293, 500
BslI CCNNNNNNNGG 3 cut(s) 169, 449, 935
BsmAI GTCTC 2 cut(s) 35, 670
BsmFI GGGAC 3 cut(s) 185, 293, 500
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 7 cut(s) 119, 162, 243, 358, 467, 741, 939
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 961
BspACI CCGC 7 cut(s) 205, 342, 501, 569, 603, 751, 801
BspANI GGCC 7 cut(s) 119, 162, 243, 358, 467, 741, 939
BspCNI CTCAG 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 540
BspFNI CGCG 2 cut(s) 90, 97
BspLI GGNNCC 3 cut(s) 353, 795, 960
BspMI ACCTGC 2 cut(s) 519, 572
BspPI GGATC 3 cut(s) 366, 413, 712
BspT107I GGYRCC 1 cut(s) 351
BsrBI CCGCTC 1 cut(s) 205
BsrFI RCCGGY 2 cut(s) 243, 354
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 2 cut(s) 243, 354
BssECI CCNNGG 3 cut(s) 50, 442, 717
BssNI GRCGYC 2 cut(s) 332, 352
BssT1I CCWWGG 2 cut(s) 50, 717
Bst2UI CCWGG 1 cut(s) 444
BstACI GRCGYC 2 cut(s) 332, 352
BstC8I GCNNGC 9 cut(s) 99, 356, 547, 567, 601, 818, 824, 896, 914
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 6 cut(s) 157, 244, 276, 280, 303, 713
BstFNI CGCG 2 cut(s) 90, 97
BstH2I RGCGCY 3 cut(s) 355, 509, 807
BstHHI GCGC 6 cut(s) 90, 97, 354, 508, 806, 822
BstMAI GTCTC 2 cut(s) 35, 670
BstMWI GCNNNNNNNGC 5 cut(s) 94, 101, 249, 329, 473
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 4 cut(s) 358, 442, 789, 934
BstUI CGCG 2 cut(s) 90, 97
BstV1I GCAGC 7 cut(s) 113, 264, 310, 709, 793, 849, 852
BstX2I RGATCY 3 cut(s) 112, 371, 653
BstYI RGATCY 3 cut(s) 112, 371, 653
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 7 cut(s) 119, 162, 243, 358, 467, 741, 939
BsuTUI ATCGAT 1 cut(s) 540
BtsCI GGATG 6 cut(s) 157, 244, 276, 280, 303, 713
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
BveI ACCTGC 2 cut(s) 519, 572
Cac8I GCNNGC 9 cut(s) 99, 356, 547, 567, 601, 818, 824, 896, 914
CfoI GCGC 6 cut(s) 90, 97, 354, 508, 806, 822
Cfr10I RCCGGY 2 cut(s) 243, 354
Cfr13I GGNCC 2 cut(s) 47, 357
ClaI ATCGAT 1 cut(s) 540
CseI GACGC 3 cut(s) 182, 321, 857
Csp6I GTAC 2 cut(s) 780, 838
CviAII CATG 2 cut(s) 124, 813
CviQI GTAC 2 cut(s) 780, 838
DdeI CTNAG 1 cut(s) 141
DinI GGCGCC 1 cut(s) 353
EaeI YGGCCR 3 cut(s) 160, 241, 465
Eco130I CCWWGG 2 cut(s) 50, 717
Eco24I GRGCYC 1 cut(s) 961
Eco47I GGWCC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 50, 717
EcoT38I GRGCYC 1 cut(s) 961
EgeI GGCGCC 1 cut(s) 353
EheI GGCGCC 1 cut(s) 353
ErhI CCWWGG 2 cut(s) 50, 717
FaeI CATG 2 cut(s) 127, 816
FaiI YATR 6 cut(s) 125, 233, 431, 450, 735, 814
FaqI GGGAC 3 cut(s) 185, 293, 500
FatI CATG 2 cut(s) 123, 812
FauI CCCGC 1 cut(s) 494
Fnu4HI GCNGC 8 cut(s) 102, 253, 324, 723, 802, 807, 863, 866
FokI GGATG 6 cut(s) 164, 251, 283, 287, 310, 700
FriOI GRGCYC 1 cut(s) 961
Fsp4HI GCNGC 8 cut(s) 102, 253, 324, 723, 802, 807, 863, 866
FspBI CTAG 2 cut(s) 51, 846
GlaI GCGC 6 cut(s) 89, 96, 353, 507, 805, 821
GluI GCNGC 8 cut(s) 102, 253, 324, 723, 802, 807, 863, 866
GsaI CCCAGC 2 cut(s) 480, 985
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 3 cut(s) 355, 509, 807
HaeIII GGCC 7 cut(s) 119, 162, 243, 358, 467, 741, 939
HapII CCGG 9 cut(s) 85, 105, 244, 355, 360, 468, 790, 874, 936
HgaI GACGC 3 cut(s) 182, 321, 857
HhaI GCGC 6 cut(s) 90, 97, 354, 508, 806, 822
Hin1I GRCGYC 2 cut(s) 332, 352
Hin1II CATG 2 cut(s) 127, 816
Hin6I GCGC 6 cut(s) 88, 95, 352, 506, 804, 820
HinP1I GCGC 6 cut(s) 88, 95, 352, 506, 804, 820
HinfI GANTC 1 cut(s) 971
HpaII CCGG 9 cut(s) 85, 105, 244, 355, 360, 468, 790, 874, 936
HphI GGTGA 4 cut(s) 139, 529, 917, 957
Hpy188I TCNGA 5 cut(s) 142, 212, 217, 561, 682
Hpy188III TCNNGA 3 cut(s) 45, 200, 291
Hpy99I CGWCG 3 cut(s) 337, 527, 873
HpyAV CCTTC 4 cut(s) 130, 748, 871, 972
HpyCH4IV ACGT 2 cut(s) 760, 840
HpyCH4V TGCA 5 cut(s) 101, 545, 565, 581, 599
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 101, 249, 329, 473
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 760, 840
Hsp92I GRCGYC 2 cut(s) 332, 352
Hsp92II CATG 2 cut(s) 127, 816
HspAI GCGC 6 cut(s) 88, 95, 352, 506, 804, 820
KasI GGCGCC 1 cut(s) 351
KroI GCCGGC 1 cut(s) 354
KroNI GCCGGC 1 cut(s) 356
LmnI GCTCC 2 cut(s) 202, 964
Lsp1109I GCAGC 7 cut(s) 113, 264, 310, 709, 793, 849, 852
LweI GCATC 3 cut(s) 120, 532, 552
MaeI CTAG 2 cut(s) 51, 846
MaeII ACGT 2 cut(s) 760, 840
MaeIII GTNAC 2 cut(s) 841, 903
MbiI CCGCTC 1 cut(s) 205
MboII GAAGA 2 cut(s) 704, 758
MflI RGATCY 3 cut(s) 112, 371, 653
MhlI GDGCHC 1 cut(s) 961
MluCI AATT 2 cut(s) 72, 218
Mly113I GGCGCC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 9 cut(s) 89, 136, 142, 287, 300, 508, 544, 820, 940
MroNI GCCGGC 1 cut(s) 354
MseI TTAA 2 cut(s) 65, 639
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 9 cut(s) 85, 105, 244, 355, 360, 468, 790, 874, 936
MspR9I CCNGG 4 cut(s) 360, 444, 791, 936
Mva1269I GAATGC 1 cut(s) 836
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 2 cut(s) 90, 97
MwoI GCNNNNNNNGC 5 cut(s) 94, 101, 249, 329, 473
NaeI GCCGGC 1 cut(s) 356
NarI GGCGCC 1 cut(s) 352
NciI CCSGG 3 cut(s) 360, 791, 936
NgoMIV GCCGGC 1 cut(s) 354
NlaIII CATG 2 cut(s) 127, 816
NlaIV GGNNCC 3 cut(s) 353, 795, 960
NmeAIII GCCGAG 1 cut(s) 188
PaqCI CACCTGC 2 cut(s) 519, 572
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 546
PctI GAATGC 1 cut(s) 836
PdiI GCCGGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 971
PkrI GCNGC 8 cut(s) 103, 254, 325, 724, 803, 808, 864, 867
PluTI GGCGCC 1 cut(s) 355
Psp1406I AACGTT 1 cut(s) 760
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 2 cut(s) 476, 981
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 353, 795, 960
PspPI GGNCC 2 cut(s) 47, 357
PsuI RGATCY 3 cut(s) 112, 371, 653
RsaI GTAC 2 cut(s) 781, 839
RsaNI GTAC 2 cut(s) 780, 838
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 65, 639
SatI GCNGC 8 cut(s) 102, 253, 324, 723, 802, 807, 863, 866
Sau96I GGNCC 2 cut(s) 47, 357
ScaI AGTACT 1 cut(s) 781
ScrFI CCNGG 4 cut(s) 360, 444, 791, 936
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 3 cut(s) 120, 532, 552
SfoI GGCGCC 1 cut(s) 353
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 2 cut(s) 72, 218
SsiI CCGC 7 cut(s) 205, 342, 501, 569, 603, 751, 801
SspDI GGCGCC 1 cut(s) 351
SspMI CTAG 2 cut(s) 51, 846
StyD4I CCNGG 4 cut(s) 358, 442, 789, 934
StyI CCWWGG 2 cut(s) 50, 717
TaiI ACGT 2 cut(s) 763, 843
TaqI TCGA 6 cut(s) 186, 227, 335, 540, 690, 707
TasI AATT 2 cut(s) 72, 218
TatI WGTACW 1 cut(s) 779
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 1 cut(s) 971
Tru1I TTAA 2 cut(s) 65, 639
Tru9I TTAA 2 cut(s) 65, 639
TscAI CASTG 1 cut(s) 262
TseI GCWGC 7 cut(s) 101, 252, 323, 722, 806, 862, 865
TspDTI ATGAA 2 cut(s) 17, 112
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 2 cut(s) 72, 218
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 2 cut(s) 51, 846
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.