RLG00000000019

ATP synthase subunit 9, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0018751
Physical Location & Seq
Forward (+)
116382 .. 116862
481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000019

Sequence Viewer

Length: 351 bp
ATGAAAAAGCGTGACGAGAATTCGAAAAAGGATATGTTAGAAGGAGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATCCATTCTGTTGCCCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTGATCTCATTCACGGATCCAGATGATATTTCTATTAAAAGACTCTCAAAGAGCGAGATGGCTCAAAGAATCGCCGATTCTATTAATAATAATAAGACTGGCGATGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000276 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0019866 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033177 GO:0034220 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_C

Protein Analysis

117

Amino Acids

12.15

Weight (kDa)

8.01

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 19 - 81 2.4e-13 ATP synthase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018751)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07671 ATMG01080
rosa_chinensis RchiOBHm_MTg0498361
rosa_laevigata RLG00000000019 RLG00000000077 RLG00000000127 RLG00000000507
rosa_roxburghii Rroxscaffold_2G00119220
rosa_samantha Rh1BG019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 1 cut(s) 86
AclWI GGATC 3 cut(s) 121, 248, 261
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 68, 92, 206
AluI AGCT 3 cut(s) 68, 92, 206
AlwI GGATC 3 cut(s) 121, 248, 261
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 68, 92
ApoI RAATTY 1 cut(s) 19
AseI ATTAAT 1 cut(s) 321
AsuII TTCGAA 1 cut(s) 23
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 55, 79
BccI CCATC 4 cut(s) 157, 223, 289, 338
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BisI GCNGC 2 cut(s) 69, 93
BlsI GCNGC 2 cut(s) 70, 94
BmiI GGNNCC 2 cut(s) 61, 255
Bpu14I TTCGAA 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 55, 79
BshFI GGCC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 229
BsnI GGCC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 3 cut(s) 126, 240, 253
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 61, 255
BspPI GGATC 3 cut(s) 121, 248, 261
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 340
BssMI GATC 3 cut(s) 126, 240, 253
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 23
BstKTI GATC 3 cut(s) 129, 243, 256
BstMBI GATC 3 cut(s) 126, 240, 253
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 92, 218, 345
BstV1I GCAGC 2 cut(s) 55, 79
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 233
CviJI RGCY 8 cut(s) 68, 92, 158, 189, 206, 233, 299, 348
CviKI_1 RGCY 8 cut(s) 68, 92, 158, 189, 206, 233, 299, 348
DpnI GATC 3 cut(s) 128, 242, 255
DpnII GATC 3 cut(s) 126, 240, 253
Eco57I CTGAAG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 19
FaiI YATR 2 cut(s) 35, 177
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 69, 93
Fsp4HI GCNGC 2 cut(s) 69, 93
GluI GCNGC 2 cut(s) 69, 93
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 63
HinfI GANTC 3 cut(s) 279, 306, 314
HpaII CCGG 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 92, 218, 345
HpySE526I ACGT 1 cut(s) 111
Kzo9I GATC 3 cut(s) 126, 240, 253
LmnI GCTCC 3 cut(s) 44, 65, 89
LpnPI CCDG 3 cut(s) 76, 270, 321
Lsp1109I GCAGC 2 cut(s) 55, 79
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 128, 242, 255
MboI GATC 3 cut(s) 126, 240, 253
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 253
MluCI AATT 2 cut(s) 19, 75
MlyI GAGTC 1 cut(s) 273
MseI TTAA 2 cut(s) 273, 321
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 92, 218, 345
NdeII GATC 3 cut(s) 126, 240, 253
NlaIV GGNNCC 2 cut(s) 61, 255
NmuCI GTSAC 1 cut(s) 11
NspV TTCGAA 1 cut(s) 23
PfeI GAWTC 2 cut(s) 306, 314
PkrI GCNGC 2 cut(s) 70, 94
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PshBI ATTAAT 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 61, 255
PsuI RGATCY 1 cut(s) 253
SaqAI TTAA 2 cut(s) 273, 321
SatI GCNGC 2 cut(s) 69, 93
Sau3AI GATC 3 cut(s) 126, 240, 253
SchI GAGTC 1 cut(s) 273
SetI ASST 5 cut(s) 61, 70, 94, 114, 208
SfuI TTCGAA 1 cut(s) 23
SgeI CNNG 8 cut(s) 23, 28, 75, 99, 153, 262, 269, 304
Sse9I AATT 2 cut(s) 19, 75
SsiI CCGC 1 cut(s) 86
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 23
TasI AATT 2 cut(s) 19, 75
TfiI GAWTC 2 cut(s) 306, 314
Tru1I TTAA 2 cut(s) 273, 321
Tru9I TTAA 2 cut(s) 273, 321
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 68, 92
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 266
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.