Rh1BG019300

ATP synthase subunit 9, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018751
Physical Location & Seq
Reverse (-)
2627529 .. 2627816
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG019300.1

Sequence Viewer

Length: 288 bp
ATGAAAAAACCATTTTTGGTAATGAAAAAGCGTGACGAGAATTCTAAAAAGGATATGTTAGAAGGAGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATCCATTCTGTTGCCCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTGATCTCATTCGTATTCCGATGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000276 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0019866 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033177 GO:0034220 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_C

Protein Analysis

95

Amino Acids

10.03

Weight (kDa)

9.92

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 26 - 88 1.4e-13 ATP synthase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018751)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07671 ATMG01080
rosa_chinensis RchiOBHm_MTg0498361
rosa_laevigata RLG00000000019 RLG00000000077 RLG00000000127 RLG00000000507
rosa_roxburghii Rroxscaffold_2G00119220
rosa_samantha Rh1BG019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 89, 113, 227
AluI AGCT 3 cut(s) 89, 113, 227
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 89, 113
ApoI RAATTY 1 cut(s) 40
BanI GGYRCC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 76, 100
BccI CCATC 2 cut(s) 178, 244
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BisI GCNGC 2 cut(s) 90, 114
BlsI GCNGC 2 cut(s) 91, 115
BmiI GGNNCC 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 76, 100
BshFI GGCC 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 250
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 147, 261
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 80
BssMI GATC 2 cut(s) 147, 261
BstAPI GCANNNNNTGC 1 cut(s) 239
BstKTI GATC 2 cut(s) 150, 264
BstMBI GATC 2 cut(s) 147, 261
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 113, 239
BstV1I GCAGC 2 cut(s) 76, 100
BsuRI GGCC 1 cut(s) 254
CviJI RGCY 6 cut(s) 89, 113, 179, 210, 227, 254
CviKI_1 RGCY 6 cut(s) 89, 113, 179, 210, 227, 254
DpnI GATC 2 cut(s) 149, 263
DpnII GATC 2 cut(s) 147, 261
Eco57I CTGAAG 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 40
FaiI YATR 2 cut(s) 56, 198
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 90, 114
Fsp4HI GCNGC 2 cut(s) 90, 114
GluI GCNGC 2 cut(s) 90, 114
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 84
HpaII CCGG 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 113, 239
HpySE526I ACGT 1 cut(s) 132
Kzo9I GATC 2 cut(s) 147, 261
LmnI GCTCC 3 cut(s) 65, 86, 110
LpnPI CCDG 1 cut(s) 97
Lsp1109I GCAGC 2 cut(s) 76, 100
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 32
MalI GATC 2 cut(s) 149, 263
MboI GATC 2 cut(s) 147, 261
MfeI CAATTG 1 cut(s) 96
MluCI AATT 2 cut(s) 40, 96
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 113, 239
NdeII GATC 2 cut(s) 147, 261
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 91, 115
PspN4I GGNNCC 1 cut(s) 82
SatI GCNGC 2 cut(s) 90, 114
Sau3AI GATC 2 cut(s) 147, 261
SetI ASST 5 cut(s) 82, 91, 115, 135, 229
SgeI CNNG 5 cut(s) 44, 49, 96, 120, 174
Sse9I AATT 2 cut(s) 40, 96
SsiI CCGC 1 cut(s) 107
TaiI ACGT 1 cut(s) 135
TasI AATT 2 cut(s) 40, 96
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 2 cut(s) 89, 113
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 17, 38
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.